Peribacillus sp. R9-11: RE409_01460
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Entry
RE409_01460 CDS
T10247
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
peri Peribacillus sp. R9-11
Pathway
peri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
peri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RE409_01460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
peri03019
]
RE409_01460
03009 Ribosome biogenesis [BR:
peri03009
]
RE409_01460
Enzymes [BR:
peri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RE409_01460
Messenger RNA biogenesis [BR:
peri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RE409_01460
Ribosome biogenesis [BR:
peri03009
]
Prokaryotic type
rRNA helicases
RE409_01460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
WMX55972
LinkDB
All DBs
Position
293079..294578
Genome browser
AA seq
499 aa
AA seq
DB search
MTLFSELGLDRTSMKSIEKMGFEEASPIQAQTIPLALEGKDIIGQAQTGTGKTAAFGIPL
MENIDIANENVQGIVIAPTRELAIQVSEELFKLGYGKRARVLAVYGGQDIDRQIRALKKK
PHIIVGTPGRLLDHIKRKNIKLGGVHTVVLDEADEMLNMGFIEDIESILSTVPDERQTLL
FSATMPDPIRKIAERFMQEPVLVRVKAKEMTVDRIEQYYLELKESEKFDTLARLFDIQTP
DLAIVFGRTKRRVDELASALNIRGYMAEGIHGDLSQAKRLSVLKKFKEGSIDVLVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKHGIAITFVTPRERGQLHAVEHTTK
KRMEKLKTPTLTEALEGQQKAVTEKILSAIENDDLSLYLGQAEELLQKHGAADLVAAMLK
SMTKEPDQTPIKLTEESPSPMRRNRGGSSSSNNRQRNGRSSSGRKDYGSGSSKRPSTNRK
SNGYGNRSTSQKREKSNKI
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
ttgacattgtttagcgaattaggattagatagaacgtctatgaaatcaatagaaaaaatg
ggatttgaagaagcaagcccgattcaagcccaaacgattccactagcacttgaaggtaaa
gacattattggtcaagcgcaaacaggaacaggtaaaacagcagcgttcggtattccattg
atggaaaatatcgatattgccaatgaaaatgtgcaaggaattgttattgcacctacacgt
gagcttgcgattcaagtttctgaagaacttttcaaacttggttatggaaaacgcgctcgt
gtattagcggtttacggtggacaagatatcgaccgtcaaatccgtgctttaaagaaaaaa
ccacatattatcgttggtacaccaggtcgtcttttggaccatatcaaacgtaaaaatatt
aaattaggcggagttcacactgtagttcttgatgaagcagatgaaatgcttaacatggga
ttcattgaggatatcgaatcaatcctttcaacggttccggacgaaagacaaacattgctc
ttctcagctactatgcctgacccaatccgtaaaattgctgaaagattcatgcaagaacca
gttcttgtgcgtgtaaaagctaaagaaatgactgtagatcgtatcgaacagtattacttg
gagctaaaagaaagtgaaaaattcgatacactagcgcgtctttttgatattcaaacaccg
gatcttgctattgtcttcggacgtacaaaacgccgtgtagatgaattggcttctgcattg
aatatccgtggctatatggctgaaggtattcatggtgaccttagccaagcgaaacgtctg
tcagtattgaaaaaatttaaagaaggtagtattgatgtacttgtagcgacagatgtggct
gcacgtggacttgatatttccggcgtaactcatgtatacaactttgatatccctcaagat
ccagaaagctacgttcaccgtattggacgtacaggacgtgcgggcaaacatggtattgcg
attacgtttgtaacaccaagagaaagaggccaactgcatgcggttgaacatacaacgaaa
aaacgtatggagaaacttaaaactcctacattaactgaagcgttggaaggccaacaaaaa
gcagtaacagaaaaaattctttcagcaattgagaatgatgatttatcattataccttggt
caagctgaagagttattacaaaaacacggcgcagcagatttagttgcagctatgcttaaa
tcaatgacaaaagaaccggatcaaacgccaatcaagttaacggaagagtctccatcccca
atgcgtcgtaaccgcggtggaagcagttcttctaataacagacaacgtaatggacgtagt
tcttctggcagaaaagattacggtagcgggtcaagtaaacgtcctagcacaaaccgcaaa
tcaaatggttacggtaatcgtagcacgagccaaaaaagagaaaaatcgaataaaatttaa
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