Peribacillus sp. R9-11: RE409_02150
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Entry
RE409_02150 CDS
T10247
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
peri Peribacillus sp. R9-11
Brite
KEGG Orthology (KO) [BR:
peri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
peri03009
]
RE409_02150 (rlmD)
Enzymes [BR:
peri01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
RE409_02150 (rlmD)
Ribosome biogenesis [BR:
peri03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
RE409_02150 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
MTS
Methyltransf_15
Cons_hypoth95
TRM5-TYW2_MTfase
PrmA
Methyltransf_4
Methyltransf_11
RrnaAD
UPF0020
PCMT
TRM
N6_N4_Mtase
Methyltransf_32
Methyltransf_12
CooC_C
TPMT
Motif
Other DBs
NCBI-ProteinID:
WMX56080
LinkDB
All DBs
Position
440723..442093
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AA seq
456 aa
AA seq
DB search
MKKTAPVAKNDIIEVLFEDLTHEGAGVAKVDGYPIFVQNALPGEKAKVKVMKTNKGYGFG
RLMEIIENSPYRVEITTEDFHKYGGCQLQHMSYEGQLEFKEKQVREVMTRIGKLEDVKVH
PIIGMENPTHYRNKAQVPVGEKDGKLIAGFFKPRTHEIVETKESIIQNEVISEAVQVVKE
IISKLGIPAYNEKTHKGVLRHIMARYGKQTGELMIVLVTRTKSIPFIETIVKEIVERLPQ
VKSIVQNVNSKKTNVILGDNMTLLWGNEVIYDLIGDVKFAISAKSFYQINPDQTKVLYDK
ALNYAGLTGEETVIDAYCGIGTISLFLAQKAKKVIGVEVVSEAIEDARRNAELNEITNAE
FIVGDAGNVIAEWYQKGNMADVIVVDPPRKGCEESLLNTIIEMKPKKVVYVSCNPGTLAR
DLHILEEGGYKAVDIQPVDMFPMTTHVENVVLLELK
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaacagcacccgttgctaaaaatgatattatagaggttttattcgaagattta
acgcacgaaggagctggagtagctaaagttgatggctatccgatctttgttcagaacgcc
cttcctggtgaaaaggcaaaagttaaagtaatgaagacaaataaaggttatggcttcgga
cgtttgatggagattatagaaaatagtccgtatcgagttgagattacaactgaagacttt
cataaatacggtggctgtcagctacagcatatgagctatgaaggacagttggaattcaaa
gaaaaacaagtccgtgaagtgatgactcgcattggaaaacttgaggatgtgaaggtacac
ccgataattggtatggaaaacccaactcattatcgtaacaaagcccaagtgcctgttggt
gaaaaggacggcaagctaatagcgggattctttaaaccacggacacatgaaattgtagaa
acgaaagaaagcattatccaaaatgaagtgattagtgaagctgttcaagttgtaaaagaa
atcatcagtaaacttggtatccctgcttacaatgaaaaaacccataaaggtgtattgcgt
cacattatggctcgttatggcaagcaaacaggcgaattgatgatagtactcgttacaaga
acgaaaagtatccctttcatcgaaacaatcgtgaaggaaatcgttgaacgtcttccacag
gtgaaatcaatcgtccaaaacgtaaattcgaagaaaacaaatgttatcttgggcgacaac
atgactttgctatggggtaacgaagtaatctatgatttgatcggtgacgtgaaatttgcg
atttccgcaaaatccttttatcaaattaatccagatcaaacgaaggttctttatgataaa
gcacttaattatgctggtctaacgggcgaagaaacggtgattgatgcttattgtggcatt
ggtaccatttcattattcttagcacaaaaagcgaaaaaggttattggtgtggaagttgta
tcagaagcgattgaagatgcacgccgcaacgctgaattaaatgaaatcacaaatgcagaa
ttcatcgttggtgatgcaggaaacgtcattgctgaatggtatcaaaagggtaacatggca
gacgtcatcgttgttgatccacctcgtaaaggttgtgaagaatctcttctaaacacaatc
attgagatgaaacctaaaaaggtcgtttatgtatcttgtaacccaggaaccttggcacgg
gaccttcatattttagaagaaggcggatataaagcagttgatatccaacctgttgacatg
ttcccgatgactacacatgttgaaaatgtagtgttgttagaattgaaataa
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