Peribacillus sp. R9-11: RE409_07895
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Entry
RE409_07895 CDS
T10247
Symbol
rnjA
Name
(GenBank) ribonuclease J1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
peri Peribacillus sp. R9-11
Pathway
peri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
peri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RE409_07895 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
peri03019
]
RE409_07895 (rnjA)
Messenger RNA biogenesis [BR:
peri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RE409_07895 (rnjA)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
RMMBL
DUF4453
DUF5548
Motif
Other DBs
NCBI-ProteinID:
WMX57124
LinkDB
All DBs
Position
complement(1635599..1637269)
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AA seq
556 aa
AA seq
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MKFVKNDQTAVFALGGLGEIGKNTYAVQFQDEIIVIDAGIKFPEDELLGIDYVIPDYSYL
EKNVDKIKGVFITHGHEDHIGGIPYLLRKVNVPVYGGKLALGLLRNKLEEHGLLRQTTMI
EISEDEVIKFRKTSVSFFRTTHSIPDSYGIVVKTPPGQIVHTGDFKFDFTPVGEPANLTK
MAEIGKEGVLCLLSDSTNSEVQNFTMSESRVGDTIQDIFRKVDGRIIFATFASNIHRLQQ
VVEAAVANGRKIAVFGRSMDSAIAIGQDLGYIVAPKDTFIDVQQLNRMPANKVTILCTGS
QGEPMAALSRIANGTHRQIQIIPGDTVVFSSSPIPGNTISVSRTINQLYRAGADVISGPL
NDIHTSGHGGQQEQKLMLRLIKPKFFMPIHGEYRMQKLHARHAVDCGVPEENCFIMDNGE
VLSLSENTAQIAGKIPSGSVYIDGSGIGDIGNIVLRDRRILSEEGLVVVVVSINMKEFKI
ASGPDIISRGFVYMRESGDLISDAQSLITKHLNKVMDRKTTQWSEIKNEITDTLSPFLYE
KTKRRPMILPIIMEVQ
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgtaaaaaatgatcaaacagctgtattcgccttgggcggtttaggcgaaatc
ggtaagaacacatatgctgttcaatttcaagacgaaatcatcgttattgatgctggaatt
aaatttccggaagacgaacttctcggaattgactatgtgattcctgactacagttattta
gagaaaaatgtagataaaattaaaggtgtcttcatcactcatggccatgaagaccacatt
ggcgggattccttatttattaagaaaagtgaatgtccctgtatatggcggtaagctagca
cttggattacttcgtaataaattggaagaacacggtcttttacgtcagacaaccatgatc
gaaatcagtgaagatgaagtgattaaatttcggaaaacttccgtctctttcttccgcaca
actcacagcatcccggattcttatggaatcgttgtaaaaacaccgcctggacaaattgtt
catactggtgattttaaattcgactttacacctgtaggcgaacctgcaaacttaactaag
atggcggaaatcggtaaagaaggagtattgtgcttactttcagacagtacgaatagtgaa
gtacagaacttcacgatgtctgaaagccgcgttggcgataccattcaagacattttccgt
aaagtggacggacggattatatttgcaacatttgcatcaaacatccatcgtcttcaacaa
gtagtagaagcagctgtagcaaatggccgtaaaattgctgttttcggccgtagcatggat
tcagctattgctattggtcaagaccttggttatattgtagctcctaaagatacatttatt
gatgtgcagcaattaaatcggatgcctgctaacaaagtaaccatcctttgtacaggtagc
caaggtgaaccaatggcagccctttcgcggattgcgaacggtactcaccgtcaaatccaa
attatacctggtgatacagttgtgttttcttcttcacctattccaggtaacacaatcagt
gtttctagaacaattaatcaattatatcgtgcaggcgcagacgtcatttcaggtccattg
aatgatattcatacatccgggcatggcggccaacaagaacaaaaacttatgcttcgttta
attaagccaaaattcttcatgccaattcatggtgaatatcggatgcagaaacttcatgcc
cgacatgcagttgattgcggggttcctgaagaaaattgctttatcatggataatggtgaa
gtgctttcgttaagtgaaaacacagcacaaatcgctgggaaaatcccttcaggttctgtt
tatattgatggaagcggcatcggcgatatcggaaacatcgttttacgcgaccgtcggatt
ctttctgaagaaggtcttgtcgttgtcgttgtcagcattaatatgaaggaattcaaaatt
gcatccggtccggacatcatctcacgtggatttgtctatatgagagaatctggagacctt
attagcgatgctcaatccttaatcactaagcacctgaataaagtaatggatcgcaaaact
actcaatggtccgaaattaaaaatgaaattacagatacattgtctccattcttatatgaa
aaaacaaaacgccgtccgatgatcctaccgatcatcatggaggttcaataa
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