Peribacillus sp. R9-11: RE409_16290
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Entry
RE409_16290 CDS
T10247
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
peri Peribacillus sp. R9-11
Pathway
peri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
peri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RE409_16290 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
peri03019
]
RE409_16290 (recQ)
03400 DNA repair and recombination proteins [BR:
peri03400
]
RE409_16290 (recQ)
Enzymes [BR:
peri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RE409_16290 (recQ)
Messenger RNA biogenesis [BR:
peri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RE409_16290 (recQ)
DNA repair and recombination proteins [BR:
peri03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RE409_16290 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HTH_40
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
Sigma70_r4_2
zf-CXXC
HEM4
Motif
Other DBs
NCBI-ProteinID:
WMX53647
LinkDB
All DBs
Position
complement(3368029..3370149)
Genome browser
AA seq
706 aa
AA seq
DB search
MIEKARDYLQKYFGYESFRTGQEQIIEQVLGGINTAGIMPTGGGKSICYQIPALLLPGVT
LVISPLISLMKDQVDALEQNGIDATLLNSSISGIEASNRMNDIKQGRYKLVYVAPERLEN
PAFQRELANVDISLVAIDEAHCISQWGHDFRPSYLKIKNLLKEMPSAPTVLALTATATPH
VTKDICQSLGISEQHTISTGFARDNLFFSVVKEENRGRFLMRYIEKNKNESGIIYAATRK
EVDSLYAKLNKAGFKTGRYHAGMNEQDRSEQQEQFIRDDVPLIVATSAFGMGIDKSNVRY
VIHYQTPKNMESYYQEAGRAGRDGLDSECILLYSPQDIQIQRFLIDQSNPSQEWQAQELK
KLNRMKDYCFTEGCLQAYILQYFGEENPEDCGHCENCTDKRDSVEVTTQAQMVLSCMLRM
GERFGKTMISQVLTGSRNKKIEEFGFQKISTYGIIKNQSAKDVADFIDFLTAKQYIEMTG
GQYPVLKVTNAGREVLLGQKKVLRKEIKQVSSISIDHGLFEELRHLRKEIASKENVPPFI
IFSDASLKDMAAKLPRTEQEFLDVKGVGTQKYDRFGAVFLEVISHYLQAHPEIEVNTMVK
KETTKRTTVPSHLESYRFYQEGKSLKEIATLRGLSSISIENHLLKCAEERLEIKWEEFFL
DEEYDLVLETAKQLDSEKLKPLKEALPDHFSYFMIKAIMVKAGLKN
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
ttgatagaaaaagcacgtgattatttacaaaagtattttggatatgagtcattccgtacc
ggtcaggaacagataattgaacaagttttaggaggaataaatacagcaggaatcatgccg
actggcggaggcaaatcaatatgctatcagattccagctcttctattgcctggtgtcacc
ctcgtcatatccccacttatttccttgatgaaggaccaagtagatgccctcgaacaaaat
ggtatagatgccacattacttaacagctctatttcagggatagaagcttccaatagaatg
aacgatattaagcagggaaggtacaagcttgtttatgtggcacctgaacgattggaaaac
cctgcttttcagagggaactggctaatgttgatatttcattggtggccattgatgaagct
cactgtatctcgcaatggggtcatgatttcagaccaagctatttaaaaatcaaaaacttg
ttgaaagaaatgccctcagctccgaccgttctagcattaacggcgacagccacaccacat
gtgacgaaggacatttgtcagtcacttggaatatctgaacaacatacaatatcaacagga
tttgcaagagataatttgtttttttccgtcgtcaaggaagagaaccgcggacggttttta
atgcgctatattgaaaaaaacaaaaatgagtcgggtatcatatatgcagcaacaaggaaa
gaagtcgattcattgtacgccaagcttaataaagctggcttcaaaacaggcagatatcac
gctggtatgaatgaacaagaccgttcggaacagcaggagcaatttattcgtgatgatgtt
cctttgatagtagcgacatcagcttttggaatgggtatcgataagtcgaatgttcgttac
gtcattcattatcaaacccctaagaatatggagagctattatcaagaagcaggtcgtgca
ggtcgagatggtttggatagcgaatgtattcttttatactcccctcaagatatacagata
caacgcttcctaatcgatcaatcgaacccttcgcaagagtggcaggcacaagaactgaag
aaattgaatagaatgaaggattattgctttactgaaggttgtttacaagcctatattctt
caatactttggagaagagaatcctgaagattgcggccactgtgaaaactgtacagataaa
cgtgactcagttgaagtaacgactcaggcacagatggttctttcgtgtatgttacgaatg
ggtgaaagatttggcaaaacgatgattagtcaggtactcactggttcccggaataagaaa
attgaagagtttggctttcaaaagatttcaacttatggaattatcaaaaatcaatcggca
aaggatgttgctgacttcattgatttcctgactgctaaacagtatatcgaaatgacaggc
gggcaatatccagttcttaaagtaaccaatgctggacgagaagtgcttttaggacagaaa
aaagtcctgcgaaaagaaataaaacaagtaagcagcattagtatcgatcatggattgttc
gaagaattgagacatttaagaaaagaaatcgcaagcaaggaaaatgtaccgcctttcatt
attttttccgatgcatccttgaaagatatggcagcaaaactgccgagaacagaacaggaa
ttccttgatgttaagggtgtaggcactcagaaatacgaccgctttggagcagtgttctta
gaagtgatttctcattatttacaagcacatcctgaaatagaagtgaatacaatggttaaa
aaagaaacaacaaagcgaaccacggtaccatctcatctagaaagctaccgtttctatcag
gaaggcaaatccctcaaagaaattgcgacattaagaggactgtcttcgatctccattgaa
aatcatctattaaagtgtgcagaagaacgtttggagatcaagtgggaagagtttttctta
gatgaggagtatgaccttgtactggaaacagccaaacaattggattctgagaaactaaaa
ccattgaaagaggcccttcctgaccatttttcatactttatgataaaagcaatcatggta
aaagcaggattaaaaaactaa
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