Peribacillus sp. R9-11: RE409_18110
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Entry
RE409_18110 CDS
T10247
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
peri Peribacillus sp. R9-11
Pathway
peri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
peri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RE409_18110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
peri03019
]
RE409_18110
03400 DNA repair and recombination proteins [BR:
peri03400
]
RE409_18110
Enzymes [BR:
peri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RE409_18110
Messenger RNA biogenesis [BR:
peri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RE409_18110
DNA repair and recombination proteins [BR:
peri03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RE409_18110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Cas3-like_C_2
DUF4886
HEM4
Arylesterase
Motif
Other DBs
NCBI-ProteinID:
WMX53989
LinkDB
All DBs
Position
complement(3737953..3739464)
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AA seq
503 aa
AA seq
DB search
MNLEHVLKEKFGFDKFRPGQKEVIESLMSGCHTLAMLPTGSGKSLCYQLPAYLLNKTTLI
VSPLLSLMQDQADQLKMRGEKSVLTLNSFLTLNQKREAFDRLHMYRFIFLSPEMLSLEGV
IKSLKTLDIGLFVIDEAHCISQWGYDFRPDYLNLGEVRLELNNPLTLALTATATKEVRKD
IIGKLNINQAKETVSSVDRDNIAILAERLFSYEEKLFRVLELVRKFTGSGIIYFSSKKVA
EAVTGFLQENGVDSVNFYHGGMDQEQRMLIQQQFISGQLKIICATSAFGMGVNKSDVRYV
IHFHMPSTMESYLQEIGRAGRDRKQSVAVLLYSEGDEGLPLHLMEQQLPTDLQIEGVCSF
LSEAKKIGANLTLSEKEQLSQSFSLNDIQLRFFTQFLTGNQDPLQHMAEMKEYCQKRKSR
NQEKLHRFLNWIYAQECRRLGILNYFDEKQQKLNPFCCDFCGMDANKMIDLLPAVKVEQV
NSYTTWKQELAFILLKKENWDEK
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgaatttagagcatgttttaaaagaaaaatttggatttgataaattccgtccaggacaa
aaagaagtgattgaatcattgatgtctggctgtcatactttagcgatgttgccaacgggg
tcaggtaagtcattgtgttatcagttgcctgcttaccttttgaataagacgaccttaata
gtttctccgttattatctttaatgcaggatcaggcagatcagctcaaaatgagaggtgaa
aaaagtgtattaacccttaattcttttttgacgttaaatcaaaaaagggaggctttcgat
cgcttacatatgtatcggtttatttttttatctcctgaaatgcttagccttgagggtgtg
ataaagtctttaaagaccttagacataggtttgtttgtcattgatgaagcacactgtatc
tcacaatgggggtatgattttcgacctgattatttgaatttaggagaagttagacttgag
ttgaacaatccactaacgctcgccttaacggcaactgcaacaaaagaagtgcggaaagat
atcattggaaaactcaatatcaatcaagctaaagaaactgtatcatctgtagatagggat
aatattgccatacttgctgagagactattcagctacgaagaaaagctattccgtgttctg
gagcttgtcagaaaattcacggggagtggcattatttatttttcatctaaaaaggtggca
gaagccgtcactggatttttacaggaaaacggggtagatagcgtcaatttttatcatggc
ggcatggatcaggaacaaagaatgcttattcagcagcaattcatttctggccaattaaaa
ataatatgcgcaacgagtgcttttggtatgggtgtaaataaatcggatgtcagatatgtt
atccattttcatatgccctctacaatggaatcttatttgcaggaaataggtagggcgggg
cgtgatcggaaacaaagtgtagcagtcttattatatagtgaaggagatgaagggcttccc
cttcatttgatggaacaacaattgccgaccgatttgcaaatagagggtgtttgttccttc
ctgagtgaagcaaaaaagataggagcaaatttgactctttctgaaaaagaacagctgtct
caatctttttccttaaatgatattcagcttcgtttttttacacagtttcttacaggaaat
caagatcctttacagcatatggcagagatgaaagagtattgtcaaaagagaaagtcccgg
aatcaggaaaaattgcatagatttctcaattggatatatgctcaggagtgtcgccgtttg
ggaattctgaattactttgatgaaaagcagcaaaagttgaatcctttctgctgcgacttc
tgtggaatggatgcgaataagatgatcgatttattgcccgcagtgaaggtagaacaagtt
aattcttataccacttggaaacaggaattggcttttatattattaaagaaggaaaattgg
gatgaaaaataa
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