Peribacillus sp. R9-11: RE409_19075
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Entry
RE409_19075 CDS
T10247
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
peri Peribacillus sp. R9-11
Pathway
peri02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
peri00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RE409_19075 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
peri03021
]
RE409_19075 (rpoD)
Transcription machinery [BR:
peri03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RE409_19075 (rpoD)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
DUF2316
NusA_N
DUF2408
Motif
Other DBs
NCBI-ProteinID:
WMX54166
LinkDB
All DBs
Position
complement(3925542..3926675)
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AA seq
377 aa
AA seq
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MAEKPARSKQVDNEFSLEQVKEKLIELGKKRGSLTLEKIAEKIGGFELDSDQMDEFYEVL
TENGVEILTDGEEDEDEDDPDEKKLAKEEEFDLNDLSVPPGVKINDPVRMYLKEIGRVDL
LSAEEEISLAMRIEEGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKA
VEKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLG
REPSPEEIAEDMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSEHA
AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL
RKLRHPSRSKRLKDFLE
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaaaaccagcacgttccaaacaagttgataatgaatttagccttgagcaggtg
aaagaaaaattaatagagctaggtaaaaaacggggctctttaactttagaaaaaatcgca
gaaaaaattggcggttttgagttagattccgatcaaatggatgagttctatgaggtgtta
actgaaaacggagtcgaaatactcactgatggtgaggaagacgaagatgaagatgatccc
gatgagaagaaacttgcaaaagaagaagagtttgacttaaatgatttaagtgttcctcct
ggcgtaaagattaacgaccctgtccgtatgtatttaaaggaaattggtcgcgttgacctt
ttatcagccgaagaggaaatctctttagcgatgcgaattgaagaaggagatgaagaagca
aaacgccgtttagctgaagccaacctgcgtctagttgtcagtattgctaagcgttatgtt
ggacgcggtatgctcttccttgaccttattcaagaaggtaatatgggacttatcaaagcg
gtagaaaaatttgattatcgcaagggatacaaatttagtacgtatgcaacatggtggatt
cgccaggccattactcgtgccattgctgaccaagcaagaacgattcgaatcccggtgcat
atggttgaaaccatcaataaattaattcgtgttcaaaggcagcttcttcaggatcttgga
cgtgaaccatctccagaagaaattgcagaggatatggatttaactccggaaaaagttcgt
gaaatcttgaaaatagctcaggagcctgtttccttggaaacgccaatcggtgaagaagat
gattcccacttaggtgacttcattgaagatcaggacgcgacttctccatctgaacatgca
gcatatgaactattgaaagaacagcttgaagacgtattagacacactgacagatcgtgaa
gaaaatgtcttgagacttcgctttggacttgatgacggccgtacacggacgcttgaagag
gtaggtaaagtgtttggagttacccgcgagcgtatccgtcaaattgaagcgaaagcatta
cgtaagctgagacacccaagtcgcagcaaacgcttgaaagacttcttagaatag
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