Peribacillus sp. R9-11: RE409_19260
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Entry
RE409_19260 CDS
T10247
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
peri Peribacillus sp. R9-11
Pathway
peri03030
DNA replication
peri03430
Mismatch repair
peri03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
peri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RE409_19260 (holA)
03430 Mismatch repair
RE409_19260 (holA)
03440 Homologous recombination
RE409_19260 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
peri03032
]
RE409_19260 (holA)
03400 DNA repair and recombination proteins [BR:
peri03400
]
RE409_19260 (holA)
Enzymes [BR:
peri01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RE409_19260 (holA)
DNA replication proteins [BR:
peri03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RE409_19260 (holA)
DNA repair and recombination proteins [BR:
peri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RE409_19260 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_delta_C
DNA_pol3_delta
HP_1247_M
AAA_assoc_2
HTH_77
DUF1848
Motif
Other DBs
NCBI-ProteinID:
WMX54198
LinkDB
All DBs
Position
complement(3963608..3964621)
Genome browser
AA seq
337 aa
AA seq
DB search
MVLDVWKSIKKGQFAPVYLLYGTEAYLINETKQLLIEHVLHEDEMDFNFSQFDLEETPIE
TALEDVETLPFIGEKRLVFMQNPFFLTAEKTKSKVEHNVKRLEAYLADPVPYSIVVLTAP
YEKLDERKKITKELKRNAVLVEAKKLGDHELKAWVKERVAAYSVQIDEQATELLLELAGT
NLMMLTNELDKMALYVEADKRITIEVVEKLVAKSLEQNIFTLVDHVLQRKMESAMTIFHD
LLRQNEEPIKILSVMAGQIRLMYQVKELSRQGYSQQKIAGQLKVHPYRVKLALEKTGKFQ
ERELLSIMNDLAEADYKMKSGQADKAITLELLLLKIR
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
ttggtattagacgtatggaaaagtattaaaaaagggcaattcgcgcctgtatatttgtta
tatggaacagaagcttatttaattaatgaaacaaagcagcttttgattgagcatgtcctt
cacgaagatgaaatggattttaacttttctcaatttgatttagaagagacgccgattgaa
acagcgcttgaggacgttgaaactcttccttttatcggggaaaaacgccttgtcttcatg
caaaatccattttttttgacagctgaaaaaacgaaatcgaaagttgaacataatgtaaaa
agactggaagcgtatttggctgacccagttccttattctattgttgttctgacagctcct
tatgaaaaactggacgaacggaaaaagattaccaaagaactgaagcgtaatgcggttctc
gttgaagcgaaaaagcttggcgatcatgaattaaaggcatgggttaaggagcgcgttgca
gcttattctgtccaaatagatgaacaagccacagaacttttgctcgaacttgcaggaacg
aatctgatgatgttgacaaatgaacttgataaaatggcactttatgtagaagctgacaaa
cgaattaccattgaggttgttgaaaagttagtcgctaaatctctagaacagaatatcttc
acacttgttgatcatgttttgcagcgaaaaatggaaagtgctatgacgatttttcacgat
cttcttcggcagaatgaagagccgattaaaatcttgagtgtaatggccggacagatccga
cttatgtatcaagtgaaggagctttcgcgtcaagggtatagtcagcaaaaaattgcaggg
caattgaaggtgcatccataccgagtaaagctagccctagaaaaaacggggaaattccag
gaacgcgagttgttgagtataatgaacgatttagctgaagcggattataagatgaaatcg
ggtcaagccgataaggcgatcacacttgagttgctgcttttgaaaattagataa
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