Peribacillus sp. R9-11: RE409_20700
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Entry
RE409_20700 CDS
T10247
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
peri Peribacillus sp. R9-11
Pathway
peri03030
DNA replication
peri03410
Base excision repair
peri03420
Nucleotide excision repair
peri03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
peri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RE409_20700 (polA)
03410 Base excision repair
RE409_20700 (polA)
03420 Nucleotide excision repair
RE409_20700 (polA)
03440 Homologous recombination
RE409_20700 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
peri03032
]
RE409_20700 (polA)
03400 DNA repair and recombination proteins [BR:
peri03400
]
RE409_20700 (polA)
Enzymes [BR:
peri01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RE409_20700 (polA)
DNA replication proteins [BR:
peri03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RE409_20700 (polA)
DNA repair and recombination proteins [BR:
peri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
RE409_20700 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RE409_20700 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_polI_exo1
5_3_exonuc
HHH_5
HHH_2
Motif
Other DBs
NCBI-ProteinID:
WMX54463
LinkDB
All DBs
Position
complement(4248628..4251252)
Genome browser
AA seq
874 aa
AA seq
DB search
MDKKLVLIDGNSIAYRAFFALPLLNNDKGVHTNSVYGFTMMLNRILEEEKPTHILVAFDA
GKTTFRHETFKEYKGGRQKTPPELSEQFPFIRELLDCFQIKRYELENYEADDIIGTLSLQ
AERDGFEVKVISGDKDLTQLSSPSTTVSITKKGITEIEEYTPKHIHEKYGLSPLQIIDLK
GLMGDASDNIPGIPGVGEKTALKLLHQFETVENLLSSIDEVSGQKLKEKIEEHKDLALLS
KELATITREAPIQVMVNETEYNGMDQERVISFYKELGFSTLLDKLDVSESVPIEQEKIEV
HTSEMTAELFADGSALYVEILEDNYHHADILGIAVSNENGHFYFHGETALTSDIFKSWAE
DETKKKTVFDAKRTVVALRHRGVEIKGIDFDVFLASYILDPAESVDEVAEITKTQGTIRL
ETDDVFYGKGAKRKVPEESELRDHIARKAKAIFSLKEPMVEKLQEFEQYHLLTELELPLS
IILANMEWQGVKVDIGRLKNMGQELAIRLKTIEGRVFDLAGEAFNINSPKQLGVILFEKL
ELPVLKKTKTGYSTSADVLEKLESQHNIVKEILLYRQLGKLQSTYIEGLLKVVNRKTDKV
HTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFIPSEKDWIVFAADYSQIELRVL
AHIANDSGLVEAFQAGMDIHTKTAMDVFHVSAEEVTSNMRRQAKAVNFGIVYGISDYGLS
QSLGITRKEAGEFIEKYLRSFPGVQEYMEESIHEARQKGYSTTLLQRRRYIPEITSRNFN
IRSFAERTAMNTPIQGSAADIIKLAMINMNKRLKKEGLKTRMLLQVHDELIFETPPEELE
ILKKIVPEEMENAIELNVPLKVDYAYGPTWFDAK
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
ttggataaaaagttagtactcatagatggaaatagtattgcttaccgcgcattttttgcg
cttccgctcttgaataatgataagggtgtacatacgaattcggtgtacggatttaccatg
atgcttaaccgcattcttgaagaagaaaagccaacgcatattcttgtggcttttgatgcc
ggtaaaacgacattcagacatgagacatttaaagaatacaagggtggacgccagaaaacg
ccgcctgaattatccgagcaattcccctttatccgcgagttgctcgactgtttccaaata
aaaaggtatgaattggaaaattacgaagccgatgatattatcggtacgctgtctctacag
gcggaaagagatggttttgaggtaaaagtcatttccggtgataaagatttaacccaatta
tcttccccgagtacgacggtttcaatcacgaaaaagggaatcactgaaattgaggaatat
acaccaaagcatatacatgaaaaatacggcctttcacccctgcaaatcattgatttaaaa
gggttgatgggtgatgcttccgataatattcctggcataccgggagttggtgaaaaaacg
gcacttaaattattacaccaatttgaaacggttgagaacctgctaagttcgattgatgag
gtaagcggtcaaaaattgaaggaaaaaattgaagaacataaagaccttgctttgttaagc
aaagagcttgcgacgattacaagggaagcgccaattcaagttatggtcaatgagaccgag
tacaacggaatggaccaggaaagggttatttcattttataaagagcttggtttttccacg
ctgctcgataaattggatgtttcagaaagtgtaccgattgaacaagaaaaaattgaggtt
cacacttcggaaatgactgcagagttgtttgctgatggaagtgctttatatgttgaaatc
ttagaagataattatcatcatgcagacattcttggaatagccgtcagcaatgaaaatggc
catttttacttccatggtgagacggcactgacttcagatatatttaaatcttgggcagaa
gatgaaacaaaaaagaaaacggtttttgacgcaaagcgcacggttgtagcactgcgccat
cgaggagttgaaataaaaggcattgattttgatgtgtttctagcatcatatatcttagat
cctgcagagtcagtggatgaagtggccgaaatcacgaaaactcaaggaaccatacgtctt
gaaaccgatgatgttttttatggaaaaggtgcaaaacgcaaggtacccgaagaatctgaa
ttgagagatcatatcgccagaaaagcgaaggctatcttttctttaaaagaacctatggtt
gaaaagctgcaggagtttgagcaataccatttgttaacggaacttgagctgcctttgtcc
attatcttggctaatatggagtggcagggtgttaaggtagatattggacgactgaaaaac
atggggcaggaattagctattcgattaaaaaccatcgaagggcgagtttttgatctggct
ggagaggctttcaatatcaattcaccgaaacaacttggggtaattctttttgaaaagttg
gagcttccagtattgaagaaaactaaaacaggctattctacgtcagctgatgtgctggaa
aaattggagagccagcataatattgtgaaagaaattttactttaccgtcagcttggtaag
ttgcaatccacctatattgaaggcttgctcaaagtagtcaatcggaaaacagataaggta
cacactcgtttcaaccaagcattaacccagaccggccgattaagctcgacagaccctaac
cttcaaaacatcccaatcaggctagaggaaggccggaaaatcaggcaggcgtttatccct
tctgaaaaggattggattgtttttgctgctgactattctcagatcgagttacgagtgctt
gcacatatcgccaatgatagcggcctagttgaagcgtttcaggcagggatggatatccat
acaaaaacagcgatggatgttttccatgtatcagcagaggaagtcacttcgaacatgaga
cgccaagcaaaagcggttaactttgggattgtctatggtataagtgactacggactttca
caaagccttggcattactagaaaagaagcgggagagttcattgagaagtatttaagaagc
tttcctggtgtacaggaatatatggaagaaagcatacatgaagctcgtcaaaaaggatat
agtacgactttgctgcaaagaaggcgttatattcctgagattacaagccgtaatttcaac
attagaagttttgccgaacggacagccatgaacacgccaattcaaggcagtgcagcagat
atcatcaaacttgccatgattaatatgaataagcgtctgaaaaaagaggggctaaaaacg
agaatgcttctgcaggtgcatgatgaattaatttttgagacacctccggaagaactcgaa
atccttaagaaaatcgtaccagaggaaatggagaatgctattgaattaaatgtgcctctc
aaagtggattatgcttacgggccaacatggtttgatgccaaataa
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