Peribacillus sp. R9-11: RE409_22580
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Entry
RE409_22580 CDS
T10247
Symbol
helD
Name
(GenBank) RNA polymerase recycling motor HelD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
peri Peribacillus sp. R9-11
Pathway
peri03420
Nucleotide excision repair
peri03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
peri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RE409_22580 (helD)
03430 Mismatch repair
RE409_22580 (helD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
peri03400
]
RE409_22580 (helD)
Enzymes [BR:
peri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RE409_22580 (helD)
DNA repair and recombination proteins [BR:
peri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RE409_22580 (helD)
MMR (mismatch excision repair)
Other MMR factors
RE409_22580 (helD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
Viral_helicase1
SLFN-g3_helicase
PhoH
DEAD
AAA_30
NACHT
nSTAND3
AAA_16
ResIII
NPHP3_N
Motif
Other DBs
NCBI-ProteinID:
WMX54816
LinkDB
All DBs
Position
complement(4653560..4655899)
Genome browser
AA seq
779 aa
AA seq
DB search
MNNEIRQEQERLDEVIETITKQISKIEGETSQRRKEVVNIRKHFWDDLKVNMDTFDDYLE
TIIGLRQQAQDLSQSEGAHRYAFKRLSTLRRMQEVPYFGRIDLTEEGSSLTEHIYIGIST
LADTTGENFIVYDWRAPISSVYYDYPPGPVEYSTPGGIIRGMLEKKWQYIIKGGVIESMF
DTSLTIGDEILQQVLGKGTDKHMHSIVSTIQREQNRIIRNDRGRLLIVQGAAGSGKTSAA
LQRIAYLLYKYRDRLKANQIILFSPNSMFNNYVSNVLPELGEENMQQVTFQEYLDHRLTD
SFQVEDPYEQLEFLLTAADDPSYSTRTASIRFKASIRFFEIIKTYSQSLELSGMIFKGLR
FRGEMLVSAKQISERFYNTDTTLRFHNRIEKLKEWLCDLLDEREKFELKQPWVQEEIEYL
SKEDYQKVYTYLEKKRGDTEDSFDDYEKENKMLARMIVRKKLKTLRKRIKALHFIDIKGI
YKQLFDDQTRIDLWNEGKTPVEREICLSTQKMLDEGKLHYEDATPFLLLKELILGFQTNT
SIKYVLVDEAQDYSPFQFEFLKRLFPSARMTVLGDFNQAIFAHASERVDFQTLTSLYGIS
ETESITLAQSYRSTKQIIEFTRELVPDGHRIKAFDREGEKPVLTQVSNRDELHDKIVSKV
KDFQSREYNTIAIICKSAAESAAAYDALSTIGEIKLVQKGTNEYEQGVVVIPAYLAKGIE
FDAVIIYDASVQAYGDESLRRLFYTACTRAMHNLQIYTVGEPSPFLLNVATDSLLLTLD
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atgaacaatgaaattcggcaggagcaagaacgtttggatgaggtgatagaaacaattacg
aaacaaatcagcaaaatagaaggtgaaacttcccagcgtagaaaagaagttgttaatatc
cgtaaacacttttgggatgacctcaaggttaatatggatactttcgatgattacctcgag
acgatcattggcttaaggcagcaggctcaagacttgtcacaaagtgaaggcgcacataga
tatgccttcaagaggttgtcaacactgcgccgcatgcaggaagtaccttatttcggccgg
attgatttaactgaagaagggtcttcccttacggaacatatttatattgggatctccact
cttgctgatacaacaggagaaaacttcattgtctacgattggagggctccgatttcgagt
gtctattatgactatcctcccggccctgtagaatattcaactcccggaggcataattcga
gggatgttagagaaaaagtggcaatatatcatcaagggaggggttatcgaatcaatgttc
gatacgagtctcactattggagatgagatactgcagcaggtgcttggtaaggggacggat
aagcatatgcacagtattgtgtccaccattcaacgggagcaaaataggatcatccggaac
gatcgcggacgcctgctcattgttcaaggagccgctggcagtggtaagacatcagctgcc
ctccaacggattgcttacttgctttacaagtatcgagataggctaaaagccaatcaaatc
attctattctctcctaactcaatgtttaataactacgtatccaatgtactacccgaactt
ggcgaagagaatatgcagcaggtaacattccaggaatatctggaccatcgtctgactgac
tcatttcaagttgaggacccttatgagcaattagaatttttgttaactgcagcggatgat
ccttcctatagcactaggacagcgagtatccgatttaaggcttcaattcgcttctttgag
ataatcaaaacatacagtcaatcactagaattatctggaatgatctttaaagggttaagg
tttcgaggggaaatgctcgtctccgccaaacaaatctcagaaagattttataacacagac
accaccctacgttttcacaataggattgaaaagttgaaagagtggttatgtgacttactt
gatgaaagggaaaagtttgagttgaaacaaccttgggtccaggaggaaatcgagtatctt
agcaaagaagactatcagaaggtatacacctacttagagaaaaaacgcggcgatactgaa
gattcctttgacgattatgagaaagagaataaaatgctcgcgcgcatgattgttcgtaag
aaattgaagacgttacgcaaacggataaaagcacttcattttatcgacattaagggaata
tacaagcaactttttgacgatcaaacacggatcgatctgtggaacgagggtaaaacacct
gtcgaaagggaaatttgcttatcaacgcaaaaaatgctggacgaaggtaaactgcattac
gaagacgcgactccatttttgctgctgaaggagttaattctagggtttcagacaaatact
tccataaaatacgtgcttgtagacgaagcacaagattattctccatttcaattcgagttt
ttgaaacggttgtttccttctgcaaggatgaccgtgcttggtgactttaaccaggcaata
ttcgctcatgccagcgaacgggtggatttccagactcttaccagtttatacggaataagt
gaaaccgagagtataaccttggctcaaagctacagatccacaaagcagattatagaattc
acacgtgaactagttcctgatggccatcgaattaaggcgttcgaccgtgaaggcgaaaaa
cctgtactgactcaagtgtcgaaccgtgatgaattgcacgacaaaatcgtgtctaaagtc
aaagactttcagagtcgtgagtataatacaatcgcaataatatgtaaatctgctgctgaa
agtgccgctgcatacgatgcccttagtaccatcggtgaaattaaactcgtacagaaaggc
acaaatgaatatgaacagggtgttgttgtcattccggcttatttggctaaaggcatcgaa
tttgatgctgtcatcatttatgatgcatctgtgcaagcatacggtgatgagagcttacga
agattgttctacaccgcatgtaccagggctatgcataacttgcagatatatacggttggc
gaacccagtcctttcttgctcaacgttgcaacggatagtttacttctgaccctagattaa
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