Peribacillus sp. JNUCC41: JNUCC41_09295
Help
Entry
JNUCC41_09295 CDS
T11068
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
perj Peribacillus sp. JNUCC41
Pathway
perj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
perj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JNUCC41_09295 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
perj03400
]
JNUCC41_09295 (mfd)
Enzymes [BR:
perj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JNUCC41_09295 (mfd)
DNA repair and recombination proteins [BR:
perj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JNUCC41_09295 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
RecG_dom3_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
QOS91854
LinkDB
All DBs
Position
1877267..1880803
Genome browser
AA seq
1178 aa
AA seq
DB search
MNGLQNLFSKQDDVHSLIAGIDEGLKEQIVSGLTGSSRSLLLASVYEKTNRPILLVTHNL
LQAQKFHEDLSSFIPEEELYIYPANELIAADLSVASPELRAQRVEALNFWAEGKKGIVIA
PIPGVRRVLPPKDIWKRHQLIFTLGEDIELEPTLSKFIAMGYNRSEMVASPGEFSIRGGI
IDIYPITEPNPIRIELFDTEIDSIRTFSSEDQRSIEKLKKVTIGPVSEALLETEHIERII
TRLESGLSKSLKKLKDEKTKEQLVQTISYELEQLKMGNIPDKIFKYLSLAYEDPASLIDY
LPVNGLVFLDEISRIQEINDSLEKEEAGWYTDLLSQGQIIHDIKLAHPMQELIMKSSRPF
VYLSLFLRHVPHTNPQNILNFASKQMQNFHGQMNVFKAELERWKKGKYTVVILGQDEERV
KKLHSVLADYDIEAAELFNADSILPGKVQILRGSLNSGFELPMQKFSIITETELFNKKSK
KSIRRQKLSNAERIKSYSELKIGDYVVHVNHGIGKYLGIETLTINGVHKDYLNIRYQADD
KLYVPVDQIDLVQKYVGSEGKEPKLYKLGGTEWKRVKSKVQSSVENIADDLIKLYAEREA
AKGYAFSPDGDMQREFETSFAYNETEDQLRSIVEIKKDMERERPMDRLLCGDVGYGKTEV
AIRAAFKAIMDGKQVAFLVPTTILAQQHYETLRERFQDYPISIGLMSRFRTKKQQTETIK
GLKAGTVDIVVGTHRILSKDIVYRDLGLLIIDEEQRFGVTHKEKIKRLKTNVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPIQTYVMEYNGSLVTEAIERELARDGQVYFLYN
RVEDIARKAEEISMLVPDARVTYAHGQMTEQELEAVMFGFLEGEYDVLVSTTIIETGVDI
PNVNTLIVNEADRMGLSQLYQLRGRVGRSNRVAYAFFTYRKDKVLTEVAEKRLQSIKEFT
ELGSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAVDAKRNDQPAEEKNT
LEIDVEVDAYIPDAYIMDGHQKIEMYKRFRGIASLEEVEELQDEMIDRFGEYPEEVSYLF
MIAEMKVYAEKAGIESIKQLKQEISILLREKVSSDVDGQKVFELGSKYGRMVGFGMDGNR
MKLVLHIKGVEQSKWLNILFEMTKGLQYVKKETQATKN
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgaatggattgcagaacttgttctccaaacaagatgatgttcattcgttaatagccggc
atcgatgaaggacttaaggagcagatcgtctctggtctcacaggttcctcgaggtctcta
ttgctggcttccgtatatgaaaagacgaataggcctattttattggttacccataattta
ttgcaagcacaaaaattccatgaggacttatccagtttcattcccgaggaagaattatat
atatatccagccaatgaattgattgcggctgatttgagtgttgccagcccggaattaagg
gcccaacgtgtagaggcattgaacttttgggcggagggaaagaaagggatcgtcattgcg
ccaattcccggggtgcgtcgcgtgcttcctccgaaggatatttggaagagacatcagctt
atctttactttaggggaagacatcgagcttgaaccaacgcttagtaaattcattgccatg
ggttataaccggtctgaaatggttgcttctccaggtgaattcagtatcaggggcggtata
atcgatatttatccgatcaccgaacccaatccaatacgaattgaattattcgataccgaa
atagattcaataaggaccttttcaagcgaagatcagcgatccatcgagaaactcaagaaa
gtgacgattggtcccgtcagtgaggctttgctagagacggagcatatcgaaagaatcata
acaaggctcgagagcggattaagtaaaagcttgaagaaacttaaagacgagaaaaccaag
gaacagctggttcaaacgatcagttatgaacttgaacagctgaaaatggggaatataccc
gacaaaatctttaaatacttaagtttagcgtatgaagatccagctagtttaatagattat
ttaccggtaaatggtttggttttcttggatgaaatcagtagaatccaggaaatcaatgat
tctttggaaaaagaagaggctgggtggtacacggatcttttaagtcagggacaaattatc
catgacatcaaattggctcatccgatgcaggaattaatcatgaaatccagcaggccgttt
gtatacctttcattgtttttacggcatgtaccgcatacgaatcctcagaatatcctgaat
tttgccagtaaacaaatgcaaaatttccatggacagatgaatgtgttcaaagctgaattg
gaacgttggaaaaaagggaaatatacagtcgtcatacttggacaggatgaagaacgggta
aaaaagctgcattcggttttagccgattatgatatagaggctgcagaactgtttaatgcg
gacagcattcttccaggtaaagtacagattttacgcggcagtctaaatagcggctttgaa
ttacctatgcaaaagttcagtatcattacggaaacggaattgtttaataagaagtcaaaa
aaatcaatacggagacaaaaactatcgaatgcggagcgaatcaagagttattccgaactg
aagatcggtgactatgtcgttcatgttaaccacggtatcggtaaatacttgggaattgaa
acccttacgataaatggggtccataaagattacctgaatattcgttatcaagcggatgac
aaattgtatgttcctgtcgaccaaattgatcttgtccaaaaatatgtcggttctgaagga
aaagaaccgaagctttataagctaggcggaacggaatggaaacgtgtcaaaagtaaggtt
caatcatccgttgagaacattgccgatgatttaatcaaattatacgcagaaagggaagcc
gcaaagggctatgccttttcacctgatggtgatatgcagagggaatttgaaacatcattc
gcttataacgaaacggaagatcaattacgttctatagtcgaaatcaaaaaggatatggaa
cgggaacggccaatggatcgtttattatgcggtgatgttggatatgggaagactgaggtg
gccatccgggccgcttttaaagccataatggatggcaagcaagttgcatttcttgttccg
accacaatcctcgcccagcagcactatgaaacattaagggagcgttttcaggattatccg
atttcgattggtctcatgagccgtttccgcactaaaaaacagcaaaccgagacgattaaa
ggattgaaggccggcacagtggatatcgtggttggcacgcataggattttatccaaagat
atcgtgtaccgcgatttgggattgcttatcattgatgaagaacagcgctttggcgttaca
cataaggaaaaaatcaaaaggttaaaaacgaatgtggatgtactgacattgactgcgaca
ccgattccaaggacccttcatatgtcgatgttgggcgtgagggatctgtccgtcatcgaa
acaccgcctgagaaccggttcccgatccaaacttatgtcatggagtataatggctcattg
gtaacggaagcgatagaacgggaattggccagggatggtcaggtttatttcctttacaat
cgggtagaggatatagcaagaaaagcagaagaaatttccatgctggtgcccgatgcccga
gtcacctatgctcatgggcaaatgacagagcaagagctggaagccgtcatgttcggcttt
ttagaaggtgaatatgatgttttggtaagtacaaccattatagagacgggtgtcgatatc
ccgaatgtcaatacgcttatcgtgaatgaagcggatagaatgggactttcacagctctat
cagctgcgtggacgtgtaggacgttccaatcgggtggcatatgcattcttcacttatagg
aaagataaagtgttgacggaagtggcagaaaaacggcttcaatccattaaggaatttaca
gaattgggttcagggttcaaaatcgcgatgcgtgatttatccatcaggggagctggaaac
attctaggggctcaacaacatggcttcatcgattcagttggttttgatctgtattcacaa
atgttgaaagaagctgtagatgcgaaacgtaatgatcagccagccgaagaaaagaatacc
ctggaaattgacgttgaggtggatgcttatatccctgatgcctacataatggatggacat
cagaaaatagaaatgtataaaaggttcagagggattgcgtcgcttgaagaagtggaagaa
ttacaggatgaaatgatcgatcgtttcggagaatacccagaagaagtttcctatttattc
atgattgctgaaatgaaggtatatgctgaaaaggccggaattgaaagcattaaacaatta
aagcaggaaatcagcattctccttagggaaaaggtcagcagcgatgtggatggacaaaag
gtgttcgagctgggatcgaagtatggccgaatggtgggctttggcatggacggcaatcga
atgaaactggtcctgcacataaaaggtgtagaacaaagcaaatggcttaatatcttattt
gagatgaccaagggtttacagtatgtaaaaaaagagacgcaagccactaaaaactaa
DBGET
integrated database retrieval system
