Peribacillus sp. JNUCC41: JNUCC41_23420
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Entry
JNUCC41_23420 CDS
T11068
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
perj Peribacillus sp. JNUCC41
Pathway
perj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
perj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JNUCC41_23420 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
perj03019
]
JNUCC41_23420 (recQ)
03400 DNA repair and recombination proteins [BR:
perj03400
]
JNUCC41_23420 (recQ)
Enzymes [BR:
perj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JNUCC41_23420 (recQ)
Messenger RNA biogenesis [BR:
perj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JNUCC41_23420 (recQ)
DNA repair and recombination proteins [BR:
perj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JNUCC41_23420 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HTH_40
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
QOS89646
LinkDB
All DBs
Position
complement(4848152..4850281)
Genome browser
AA seq
709 aa
AA seq
DB search
MMEKARDYLQEYFGYESFRKGQEQIIEQVLEGINTAGIMPTGGGKSICYQIPALLLPGVT
LVISPLISLMKDQVDALEQNGIDATFLNSSISGIESSNRMNDIKQGRYKLVYVAPERLEN
PAFQQDLFNVEISLVAIDEAHCISQWGHDFRPSYLKIKTLLKNMPSAPTVLALTATATPH
VTDDICQSLGISVQHTVSTGFSRDNLFFSVVKEENRGRFLMRYLEKNKSESGIIYAATRK
EVDTLYAKLIKAGFKTGRYHAGMNEQDRSEQQDQFIRDDVPLMVATSAFGMGIDKSNVRY
VIHYQTPKNMESYYQEAGRAGRDGLESECILLYSPQDMQIQRFLIDQSNPSQEWQSQELK
KLNRMKDYCFTEGCLQAFILRYFGEENPEDCGHCENCTDKRDSVEVTTQAQMVLSCMLRM
GERFGKTMISQVLTGSRNKKIEEFGFQKLSTYGIINDQSAKDVGDFIDFLTAKQYIEMTG
GQFPVLKVTNAGREVLLGQKKVLRKEMKKVSSISADHGLFEDLRQLRKELASKENVPPFI
IFSDASLKDMAVKLPRTEEEFLEVKGVGMQKFERFGSVFLQGISQYVQAHPEIETNTMVT
KETVKRATKPSHLESYRLYREGKSIKEIGTLRGLSSVSIENHLLKCAEEHLDIKWDEIFS
DKEFDLVLETAKQLDSEKLKPLKEALPEHISYFMIKAILVKAGLENERR
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
ttgatggaaaaagctcgtgattatttacaggaatactttggttatgaatcattccgaaaa
ggtcaggaacagattatcgaacaagttttagaaggaataaacacggcgggaatcatgcct
actggcggaggtaaatcaatatgttaccaaattccagcccttctgttaccaggtgtaaca
ctcgtgatatccccacttatttccttgatgaaggaccaagtagatgccctcgaacaaaat
gggattgatgccacatttcttaatagctccatttctgggatagaatcatccaatagaatg
aacgatattaagcaggggagatataagctagtttatgttgcacctgaacggctggaaaat
cctgcatttcaacaggatctatttaatgtggaaatttcattggttgccattgatgaggcc
cactgtatatctcaatggggacatgacttcagaccaagttatttaaaaatcaaaacctta
ttgaaaaacatgccatcagctccgactgtcctggcattaacggcaacagccacaccgcat
gtgaccgatgatatatgtcagtcactaggaatatcagtgcagcatacagtatcaacggga
ttttccagggataacctgttcttttccgttgtgaaagaagaaaatcgcggacggttttta
atgcgctatttagagaaaaacaaaagtgaatccggtatcatatatgcagccactaggaaa
gaagtcgataccttgtatgccaaacttattaaagccgggttcaaaacaggtcgataccat
gctggcatgaatgaacaagaccggtcggaacagcaagaccaattcattcgggatgacgtt
cccttgatggtggcaacatccgcctttgggatgggaatcgataagtcgaatgtcagatac
gtcatccattaccaaactccaaagaacatggagagttattatcaagaagccggccgtgca
gggagggatggattggaaagtgaatgtatcctcttatattcccctcaggatatgcagata
cagcgtttcttgattgatcaatctaatccctcgcaggagtggcaatcccaggaattaaag
aaattgaacagaatgaaggattattgttttacagaagggtgcttgcaagccttcatcctt
cgatactttggagaagaaaacccggaagattgcggtcattgcgaaaattgtacagataaa
cgtgactctgttgaagtaactactcaggcacagatggtcctttcatgcatgttgcgaatg
ggtgagcgattcggtaaaacgatgatttcccaagtgcttacgggatcacgcaataagaaa
attgaagagtttggattccagaagctttcaacctatggtatcatcaatgatcaatctgcg
aaggatgtaggtgatttcattgatttcctgactgcaaaacagtacatcgaaatgacgggc
ggccagtttccggtcctcaaggtcaccaatgctggcagggaagtgttactgggacagaaa
aaagtcctgcgtaaggaaatgaaaaaagtaagcagcatcagtgcagatcatgggttgttc
gaagatttaagacagttaagaaaagaattggcaagtaaggaaaatgtacctccattcatt
attttttccgatgcatctttgaaagatatggctgtcaaattgccgaggacagaagaggaa
ttcctggaagttaaaggcgtagggatgcagaaatttgaacgcttcggatctgtgttctta
caaggtatttcccagtatgtacaggcacatcctgaaatagaaacgaatactatggttaca
aaggaaacggtaaagcgagctactaaaccatctcatttagaaagctaccgcttatatcgg
gaaggcaaatcaatcaaggaaataggaacattgagagggctgtcttccgtttcaattgaa
aatcatttattaaagtgtgcagaagaacatttggatatcaaatgggatgagattttctcg
gataaagagtttgatcttgttttggaaactgcgaaacaattggattctgaaaaattgaaa
ccgctaaaagaagccttgcctgagcatatttcctacttcatgattaaagcgatcttggtt
aaagcagggttggaaaacgaaaggcgataa
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