Peribacillus sp. JNUCC41: JNUCC41_23725
Help
Entry
JNUCC41_23725 CDS
T11068
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
perj Peribacillus sp. JNUCC41
Pathway
perj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
perj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
JNUCC41_23725 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
perj03400
]
JNUCC41_23725 (ligD)
Enzymes [BR:
perj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
JNUCC41_23725 (ligD)
DNA repair and recombination proteins [BR:
perj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
JNUCC41_23725 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QOS89697
LinkDB
All DBs
Position
4920350..4922197
Genome browser
AA seq
615 aa
AA seq
DB search
MKPMLPTYYPEAPNSKDWRYEVKYDGFRAILTIDSDTISISSRNEKELSPQFPEIIAYIK
NLHLKDYLPLRLDGELVWLTNQAKADFFQIQWRGRLGKQSLISENARFSPCRFIAFDLLS
ISGKNVAAKPMEERRELMLNMGANLGFPMPPDPNDKALIQLIESFDILDNALNKVTLLDG
EGVVAKEIRGTWQEGKRTASWIKVKNWKTVSCFITALHKENGYVSLAVFKEGAVTKIGSV
KNGLSPQDKRILHELIKQNASDEDTQFFYIHPSICIEVQFLHVYEENELREPQFSQWLLQ
TAPEECTWEKFVLGQYTFPDSVQITSRDKPLWITGNKKVIKVEYLHYLREVSAFFLPFLK
NKLLTTIRYPHGTLDKERFFQKNKPDYAPSFIKTFIDEDIEYMLCDDIETLLWFGNQLAL
EFHAPFQKAGKTRPDEIVLDLDPPSIEYFSLAIKAAQEIKKVMDSLRIKAFVKTSGNKGL
QIHIPLPVDTFTYQETRIFTDFLGDYLSSSNPNDFTTERMKINRHNRLYLDFVQHSEGKT
IILPYSPRGNSFAGVATPLFWKEVDENLQLKDFTIETIPSRIKKEGCAFMDYRLIDNGPA
FLEVLSFLKQKKTNS
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgatgctgcctacctattaccctgaagcccccaattccaaggattggcgttat
gaagtcaaatatgacggctttagggctattttaacgatagactccgataccattagcatt
tcgagtcggaacgaaaaggaattatcaccacaattcccggaaatcattgcttacatcaaa
aatctgcacctgaaagactatctcccgcttcggttagatggcgaattggtctggcttacc
aatcaggcgaaagccgacttttttcaaatacagtggcgaggacgccttgggaaacaatcc
ttaatttcagaaaatgcccgtttttccccatgccggttcatagcgtttgacctgcttagc
atcagcggaaaaaacgtagcagctaaacccatggaagaaagaagggaattgatgttgaat
atgggggcaaatcttggctttcctatgccccctgatcccaacgataaggctttgatacaa
ttaatagagagttttgacatattggataatgccttgaataaggtcaccctattagatggc
gaaggggttgtcgccaaggaaattcgtgggacttggcaagaagggaaacgtactgcctca
tggatcaaggtgaaaaattggaagaccgtttcttgtttcattacagcattgcataaagaa
aatggttacgtttccctcgcagttttcaaagaaggtgccgtaaccaaaatcggaagtgtt
aaaaatggactgagtcctcaagataaaaggatattgcatgaactgatcaagcaaaatgca
tcagacgaggacacacaatttttttatatccatccatccatttgcatcgaagtccaattc
ttgcacgtgtatgaggagaatgaattgcgtgagcctcaattttcacaatggcttttacaa
acggctcccgaagaatgtacctgggagaaattcgtgctaggtcaatatacatttccagat
tctgtgcaaataacttccagggataaaccgctttggataacaggaaataaaaaggtgata
aaggttgaatacctccattatttacgggaggtttcagctttcttcttacccttcttgaag
aataaactgcttacgacgatccgctatcctcatggcactttggataaagaaagatttttc
cagaaaaacaaacctgattatgcaccgtcctttattaaaacgttcattgatgaagatatc
gagtatatgctatgtgacgatattgaaacgcttctttggttcggcaatcaacttgcattg
gaattccatgcgccatttcagaaagcgggtaaaacacgccccgacgaaatcgtcctggac
ttggatcctccttccatcgaatatttctccttagcgataaaggccgcacaggaaataaag
aaggtgatggattcattaaggataaaagcttttgtaaaaacttcaggtaacaaaggactg
caaatacacatcccactgcctgtagacacatttacttatcaggagacacgcattttcact
gactttctcggtgactacttatcaagttccaacccaaatgattttacaacggaaaggatg
aaaataaatcggcataatcgactttacttggactttgtgcagcatagtgaaggaaaaacc
atcatccttccttattccccgcggggaaattctttcgctggtgtggctacacctttgttt
tggaaggaagtggacgaaaatctccaattaaaggactttacgattgaaaccataccaagc
agaataaaaaaggaagggtgtgcatttatggattacagactcatcgataatggaccagcc
tttttggaagtattgtcgttcctaaaacaaaaaaagaccaacagctga
DBGET
integrated database retrieval system
