Peribacillus sp. JNUCC41: JNUCC41_25225
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Entry
JNUCC41_25225 CDS
T11068
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
perj Peribacillus sp. JNUCC41
Pathway
perj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
perj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JNUCC41_25225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
perj03019
]
JNUCC41_25225
03400 DNA repair and recombination proteins [BR:
perj03400
]
JNUCC41_25225
Enzymes [BR:
perj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JNUCC41_25225
Messenger RNA biogenesis [BR:
perj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JNUCC41_25225
DNA repair and recombination proteins [BR:
perj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JNUCC41_25225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Arylesterase
Cas3-like_C_2
Mre11_C_bact
Motif
Other DBs
NCBI-ProteinID:
QOS89971
LinkDB
All DBs
Position
complement(5233605..5235113)
Genome browser
AA seq
502 aa
AA seq
DB search
MMNIERVLKEKFGFNEFRPGQKEVVESLMSGRHTLAMLPTGSGKSLCYQLPAYLLNKTVL
IVSPLLSLMQDQADQLKMSGEKSVLTLNSFLTLNQKRKAFDRLHSYRFIFLSPEMLSLDG
VIKSLKSIDIGLFVIDEAHCISQWGYDFRPDYLNLGEVRRELNNPLTLALTATATDEVRR
DIVGKLNIGQAKEMVSSVDRENIAIIVERMFSYDEKLARVLELVKKFTGSGIIYFSSKKV
AESVTGFLQDNGIDSVNYYHGGMEQEQRMLIQQQFISGQLKIICATSAFGMGVNKSDVRY
VVHFHIPSTMEGYLQEIGRAGRDRKQSVAVLLYSEGDEGLPLHLMEQQLPTDSQIDGVCS
FLNASHKNMANLTLTEKDQLSQSFSLNETQLRFFTQLITGNNLDQMEEMKDYCQKRKSRN
QEKLYKFLHWIYAQECRRLGILDYFGEMHREVNPICCDICGMDVEKMADVWPEVKMDPVN
SFSTWKKELAYILLKKENGNEK
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgatgaacatagaacgggtcctcaaagaaaaattcggatttaatgaattccgccctgga
caaaaggaagtggttgaatcattgatgtccggccgtcataccttagcgatgctcccaacc
gggtcaggtaaatcattatgttaccagctgcctgcttatctcttaaataagactgttcta
attgtttccccgttattatctttaatgcaggatcaagcagatcagctgaagatgagcggc
gaaaaaagtgtattgaccctcaactcttttttgacgctaaatcaaaaaaggaaagctttt
gaccggttacatagttatcgttttatctttttatcccctgaaatgctaagcctggacgga
gtgataaaatccttgaaatccatagacataggtttattcgtcatagatgaagcacattgc
atctcacaatgggggtatgatttccgtccggattatttgaatttaggagaagtgaggcgt
gaattgaacaatccgttgactcttgccctgacggcaactgcaaccgatgaggtccggagg
gacatcgttggtaaactcaacattgggcaggccaaggaaatggtctcatctgttgatcgg
gaaaatattgcaattattgtcgagcggatgttcagctacgatgagaagctagcccgtgtg
ctggaacttgtcaagaaatttaccggaagcggaattatttatttttcctctaaaaaagtg
gcggaatcagtcactgggtttttacaggataacgggatcgatagtgtcaattattatcac
ggtggaatggaacaggagcaaaggatgctcattcagcagcaattcatttccggccagttg
aaaattatatgtgcgacaagtgcttttggaatgggtgtgaataaatcggatgtcagatac
gttgtccattttcatatcccgtccacgatggaagggtatcttcaggagataggcagggcg
ggacgagatcggaaacaaagtgtggctgtcttattatatagcgaaggggatgaagggctt
cccctgcatttgatggagcaacagttgcctacggattcgcaaatcgatggtgtatgttct
ttccttaatgcatcacacaaaaatatggcgaatttgaccctcacggaaaaagatcagctg
tctcaatccttttcgttgaacgaaacccagctccgtttttttacgcagcttatcacgggc
aataacctagatcaaatggaagagatgaaagactattgtcaaaagagaaaatcaaggaat
caggaaaagctgtataaattccttcactggatatatgcccaggaatgtcgccgtttaggg
atactggactactttggagaaatgcatcgggaagtgaatcccatctgctgtgatatttgt
gggatggatgtcgaaaaaatggctgatgtatggccggaagtgaagatggatccggtgaat
tccttttccacttggaaaaaggaattggcttatatcttattaaagaaggaaaatggcaat
gaaaaataa
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