Peribacillus sp. S4: ACJ9PY_02350
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Entry
ACJ9PY_02350 CDS
T11198
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pers Peribacillus sp. S4
Brite
KEGG Orthology (KO) [BR:
pers00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pers03009
]
ACJ9PY_02350 (rlmD)
Enzymes [BR:
pers01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
ACJ9PY_02350 (rlmD)
Ribosome biogenesis [BR:
pers03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
ACJ9PY_02350 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
MTS
Methyltransf_15
Cons_hypoth95
PrmA
TRM5-TYW2_MTfase
RrnaAD
Methyltransf_11
Methyltransf_4
TRM
N6_N4_Mtase
PCMT
Methyltransf_12
UPF0020
Methyltransf_32
TPMT
2-ph_phosp
Ubie_methyltran
Methyltransf_23
Motif
Other DBs
NCBI-ProteinID:
XMN25857
LinkDB
All DBs
Position
487746..489116
Genome browser
AA seq
456 aa
AA seq
DB search
MKKTAPVAKNDIVEVLFEDLTHEGAGVAKVDGYPIFVQGALPGEKAKIKVMKANKGYGFG
RLMEIIENSPYRVEVTTEDYHKYGGCQLQHMSYEGQLEFKEKQVREVMTRIGKLEDVKVH
PIIGMENPTHYRNKAQVPVGEKDGKLIAGFFKPRTHEIVETKESIIQNEVINEAVQVVKE
IFSKLGIPAYNEEAHKGVLRHIMARYGKQTGELMIVLVTRTKSIPFIETIVKEIVERLPQ
VKSIVQNVNSKKTNVILGDKMTVLWGDEVIHDMIGDVKFAISAKSFYQINPDQTKVLYDK
ALDYAGLTGEETVIDAYCGIGTISLFLAKKAKKVIGVEVVEEAIEDARRNAELNEISNAE
FMVGDAGNVIAEWYQKGNTADVIVVDPPRKGCEESLLNTIIEMKPNKVVYVSCNPGTLAR
DLHILEEGGYKAVDIQPVDMFPMTTHVENVVLLELK
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaacagcaccagttgctaaaaatgatatagtagaggttttatttgaagattta
acacatgaaggagctggcgtcgctaaagtcgatggctacccgatctttgttcagggcgcc
cttccaggtgaaaaagcaaaaatcaaagtaatgaaggctaataagggttatggcttcgga
cgcttgatggagattatcgaaaacagtccataccgggttgaggtcacgactgaagactac
cataagtacggtggttgtcagctgcagcatatgagctatgaaggacagttggaattcaag
gaaaagcaagtacgtgaagtgatgacacgcattgggaaacttgaggatgtgaaggttcac
ccgatcatcgggatggagaatccaacccattatcgcaataaagcgcaagtgcctgttggt
gaaaaggatggcaagctaatagcagggttcttcaaaccgcggacacatgaaatcgttgaa
acgaaagaaagcattatccaaaatgaagtgattaatgaagccgttcaagtcgttaaagag
attttcagtaaacttggtatccccgcttacaatgaagaggcacataaaggtgtattgcgg
cacatcatggcccgttatggcaagcaaacaggggaattaatgattgttcttgttactaga
acgaaaagtatccctttcatcgaaaccatcgtgaaggaaatcgttgaacgtcttccacaa
gttaaatccatcgttcaaaacgtgaattccaagaaaacgaatgttatcttaggtgataaa
atgactgtgctatggggcgacgaagtgatccatgatatgatcggtgatgtgaaatttgcg
atatcagcaaaatccttctaccaaatcaatccagatcaaacgaaagtcctttatgataaa
gctcttgactatgcagggctgactggtgaagaaacggtgatagatgcctattgcggcatt
gggaccatctcattatttttagctaaaaaagcgaaaaaagtaatcggtgtcgaagtggtc
gaagaagcgatcgaagacgcacggcgcaacgctgaattgaatgaaatctcaaatgcagaa
ttcatggtcggcgatgcaggtaacgttattgctgaatggtatcaaaagggcaatactgct
gatgtcatcgtggtggatccgccacgcaaaggttgtgaagaatcccttctgaatacgatc
atcgagatgaagcctaataaagtcgtatacgtatcatgcaacccaggcactctagcgcgt
gatcttcatatcttggaagaaggcggatataaagcagttgatatccagcctgtcgatatg
ttcccaatgactacacatgttgaaaatgtagtgttattagagttgaaatga
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