Peribacillus sp. S4: ACJ9PY_14845
Help
Entry
ACJ9PY_14845 CDS
T11198
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pers Peribacillus sp. S4
Pathway
pers03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pers00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ACJ9PY_14845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pers03400
]
ACJ9PY_14845
Enzymes [BR:
pers01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ACJ9PY_14845
DNA repair and recombination proteins [BR:
pers03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ACJ9PY_14845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
XMN23306
LinkDB
All DBs
Position
3157498..3159345
Genome browser
AA seq
615 aa
AA seq
DB search
MKPMLPTYYPEAPNSKDWRYEVKYDGFRAILTIDSDTISISSRNEKELSPQFPEIITFIK
DLDLEDYLPLQLDGELVWLTNQAKADFFQIQWRGRLGKQSLISENARFSPCRFIAFDLLR
ISGKDIADKPMLERRELMLNMGGKLGLPMPPDPNDKALIQLIESFDVLDIALNKVTLLDG
EGIVAKEIRGAWQEGRRTTSWIKVKNWKTVSCFITALHKENGYVSLAVFKEGAVTKIGSV
KNGLSARDKSILHQLIKQNASDEDAQFFYIHPSICIEVQFLHVYEENELREPQFSQWLLQ
TSPDECTWEKFVLGQYTFPDTVQITSRDKPLWKTEGKQVVKVEYLHYLREVSAFFLPFLK
DKLLTTIRYPHGTLDKERFFQKNKPDYAPDFIKTFMDEDIEYMLCNDIETLLWFGNQLAL
EFHAPFQKAGKTRPDEIVLDLDPPSIEYFSLAVKAAQEIKKVMESLRIKAFVKTSGNKGL
QIHIPLPEDRFTYQETRIFTDFLGDYLTSSNPNDFTTERMKINRHNRLYLDFVQHSEGKT
IILPYSPRGNSFAGVATPLFWEEVNESLQLKDFTIETIPNRIKRDGCAFMDYRLVDNGPA
FLEVLSFLKQKKTNN
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgatgctgccaacatattaccctgaggcccccaactccaaggattggcgttat
gaagtcaaatatgacggctttagggctattttaacgatagactccgataccataagcatt
tcgagtcgaaatgaaaaggaattatcacctcaattcccagaaatcattactttcatcaaa
gacctggacctggaagattatctcccgcttcagttagatggagaattggtctggcttacg
aatcaggcgaaagcggacttttttcaaatacagtggcgaggacgccttgggaaacaatcc
ttaatttcagaaaatgcccgtttttccccatgtcggtttatagcgtttgacctgcttcgc
atcagcggaaaagacatagcagataaacctatgttggaacgaagggaattgatgttgaat
atggggggaaaactcggtcttcctatgcctcctgatcccaatgataaggctttgatacaa
ttaatagagagttttgacgttttggatattgccttgaataaggtcaccttgttagatggc
gaagggattgtcgctaaggaaattcggggtgcttggcaagaaggaagacgtactacatct
tggattaaggtgaaaaattggaagaccgtttcttgtttcatcacagcattgcacaaagaa
aatggctacgtttcccttgcagtattcaaagaaggtgccgtaacgaaaatcggaagtgtc
aaaaatggactgagtgctagagataaaagtatattgcatcaattaatcaagcaaaatgca
tcagacgaagacgcacaatttttttatatccatccatccatttgcattgaagttcaattc
ttgcacgtttatgaggaaaatgaattgcgtgaacctcagttttcccagtggcttttacaa
acttctcccgacgaatgtacctgggagaaattcgtgctaggccaatatacatttccagat
actgtacaaataacttccagggataaaccgctttggaaaacagaaggaaaacaggtggta
aaagtagaatatcttcattatttacgggaggtttcagctttcttcttacccttcttgaag
gataagcttcttaccacgatccgctatcctcatggaactttggataaagaaagatttttc
caaaaaaacaaacctgattatgcgccggactttataaaaacgttcatggatgaggatatc
gagtatatgctgtgtaacgacattgaaactctcctttggtttggtaatcaacttgcattg
gaatttcatgccccatttcagaaagccggtaaaacaagacccgacgaaatcgtcctggac
ttggatcctccttccatcgaatatttctctcttgcggtaaaggctgcacaggaaataaaa
aaggtgatggaatcattaaggattaaagcttttgtaaaaacttcaggtaacaaaggactg
caaattcacatccctctgcctgaagacagatttacttatcaggagacacgcatattcact
gactttctgggtgattatttaacaagttccaatccgaatgattttacaacggaaagaatg
aaaataaatcggcataatcgactttacttggactttgtgcagcatagtgaaggaaaaacc
atcattcttccttattccccacggggaaattctttcgctggtgtggctacacctttgttt
tgggaggaagtgaacgaaagtctccagttaaaggactttacgattgaaaccataccaaac
agaataaaaagggacgggtgtgcgtttatggattaccgactggtggataatggaccagcc
tttttggaagtattgtcgttccttaaacagaaaaagaccaataactaa
DBGET
integrated database retrieval system
