Peribacillus sp. S4: ACJ9PY_25150
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Entry
ACJ9PY_25150 CDS
T11198
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pers Peribacillus sp. S4
Pathway
pers03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pers00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACJ9PY_25150 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pers03019
]
ACJ9PY_25150 (rnr)
03016 Transfer RNA biogenesis [BR:
pers03016
]
ACJ9PY_25150 (rnr)
Enzymes [BR:
pers01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ACJ9PY_25150 (rnr)
Messenger RNA biogenesis [BR:
pers03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACJ9PY_25150 (rnr)
Transfer RNA biogenesis [BR:
pers03016
]
Prokaryotic type
tRNA degradation factors
ACJ9PY_25150 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
OB_HELZ2
S1_RRP5
OB_Dis3
CSD
WHD_GPIID
MarR_2
Motif
Other DBs
NCBI-ProteinID:
XMN25172
LinkDB
All DBs
Position
complement(5227874..5230231)
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AA seq
785 aa
AA seq
DB search
MEDNIQEHINKLLTYMTDEAYKPLTVQELEEALKIEDSADFKNFVKALVKMEEKGLVVRT
RSNRYGLPQKMNLFRGKLTGHAKGFAFVTPEDNPGMDDIFIPPNETGTAMHGDVVMVRVS
SETSGSRQEGTVIRILERGITQVVGTYSESKSFGFVIPDDKKIANDIFIPQHASHGAVEG
HKVVVKLTSYPEGRISAEGEVIEILGHKNDPGVDILSVIHKYGLPMEFPDDVMEQANAVS
DTIQESEIGNRRDLRNDVLVTIDGADAKDLDDAVTVSKLENGNYKLGVHIADVSHYVKEG
SPIDKEALERGTSVYLVDRVIPMIPHRLSNGICSLNPQVDRFTLSCEMEITPDGKVVNHD
IFESVIKTTERMTYGNVNKILVDKDEEQLERYEALVPMFQDMEKLAAILRKNRMNRGAID
FDFNEARVIVDEEGHPTDVVLRERSVAEKLIEEFMLAANETVAEHFHRLDLPFIYRIHED
PKPEKLQRFFEFITNFGYIVRGSANDVHPKALQEIIEAVAGKPEETVISTVMLRSMQQAK
YDPESLGHFGLSAEFYTHFTSPIRRYPDLIVHRLIRTYLVEGKMDEATKEKWNANLPEIA
DHTSKRERRSVDAERETDDLKKAEYMLDKIGEEYTGIIGSVTNFGMFVELPNTIEGLVHV
SFMTDDYYRFDERQLAMIGERTGNVFRIGDEIDVRVSNVNKEERAIDFEIIGMKVSRPRP
SGEKKIFKANSGERKRGRGGSGGRKEGKGGDRNGDSTSSGRKSKKKKKFFENAPAAKRKR
KPKKR
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atggaagataacattcaagaacatattaataagcttctgacatacatgacggatgaagcg
tataagccgctaacggtacaagaactggaagaggctttgaaaatcgaagactcggcagat
ttcaagaatttcgttaaggctttagtaaaaatggaagaaaagggattggtggtcagaacg
aggagcaatcgttacggcctgccgcaaaaaatgaatttgttccgcggtaaattaacgggg
cacgcaaaggggtttgcctttgtcacacctgaagacaacccgggaatggatgatattttc
attccgccaaatgaaacgggcacagcgatgcatggagatgtcgtcatggtacgggtatct
tcggaaacatcgggctcaaggcaagaaggcacggtcatcagaatacttgaacgcggaatt
acacaagttgtcggtacatactccgaaagtaaaagttttggtttcgtcatccctgatgat
aaaaagatcgcaaacgatatcttcattccacagcatgcttcacatggagcggtagaggga
cataaggttgtcgtcaagcttacttcttatcctgagggacgcataagtgccgaaggtgaa
gtcattgagattcttggccataaaaatgatcctggtgtggatattctttccgtgatccat
aagtatggtttgccgatggagttcccggatgacgtcatggagcaggccaatgccgtttcc
gataccattcaagaaagtgaaattggcaaccgcagggacttgcgtaatgatgttttggtt
acgattgatggagcggatgcaaaggatctggatgatgccgtcactgtttccaagcttgag
aatggcaattacaagctgggcgttcatattgctgatgtcagtcattacgtgaaggaaggt
tctccaatcgataaggaagccctggaaagagggacgagcgtgtatttggtggacagggtc
atcccgatgatcccgcatcgtttatcgaatggcatttgttccttgaacccacaagtcgat
cgttttacactctcatgtgaaatggaaatcacgccggatggcaaagtcgtcaaccatgat
atttttgaaagtgtcattaagacgacggaacgtatgacatatggcaatgtgaacaaaatc
cttgtcgataaagatgaagaacagcttgaacgctatgaagcgttggtgccgatgttccag
gacatggagaagctagcggccatccttcgcaagaaccggatgaaccgcggtgcaatcgac
tttgatttcaatgaagcaagagtcatcgttgatgaagagggccatccgactgatgtggtt
ttacgtgaaaggtcggttgcggaaaagctgattgaagagttcatgcttgcagctaatgaa
accgttgctgagcatttccaccgtcttgacctaccgttcatttaccgtattcatgaagat
ccaaagccggaaaaactgcagcgattcttcgaattcattacgaacttcggatacattgta
aggggatcggccaatgacgtccatcctaaggcgttacaggaaatcattgaggcggttgcc
ggtaagccggaagaaacggtcatatccaccgtcatgcttcgttccatgcaacaggcgaaa
tatgatccggagagcttaggccactttggtttatctgctgagttttatacacatttcaca
tcgccgattcgccgttacccggatttgatcgtgcacaggctgatcaggacctacttggtg
gaaggtaaaatggatgaagctacgaaggagaaatggaatgccaatttacctgagattgcc
gatcatacatcgaaacgtgaacgtcgctcagtcgatgccgagcgggaaacggatgatctg
aaaaaagcggaatacatgctggataaaatcggcgaggaatataccgggatcattggttca
gtcaccaattttgggatgttcgtcgagctgccgaacacgattgaaggacttgtccatgtc
agcttcatgacggatgattattatcgcttcgatgagcgtcagctagcaatgatcggggaa
cgtaccggtaatgtgttccggattggcgatgaaatcgacgtacgggtttccaacgtcaat
aaagaggaacgcgccatcgattttgaaattatcggcatgaaggtaagccgtccgcgtcca
tccggcgagaagaaaatattcaaagccaattcaggtgaacgcaaacgcggccgaggcggc
agtgggggacgtaaggaaggaaaaggcggcgaccgtaatggagattcgacttcttctgga
agaaaatcgaaaaagaagaaaaaattctttgaaaatgcgccagctgccaagcgcaagaga
aaacctaaaaagagataa
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