Candidatus Sodalis pierantonii: SOPEG_1101
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Entry
SOPEG_1101 CDS
T03006
Symbol
orn
Name
(GenBank) 3'-to-5' oligoribonuclease (orn)
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
pes
Candidatus Sodalis pierantonii
Pathway
pes03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pes00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
SOPEG_1101 (orn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pes03019
]
SOPEG_1101 (orn)
03009 Ribosome biogenesis [BR:
pes03009
]
SOPEG_1101 (orn)
Messenger RNA biogenesis [BR:
pes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SOPEG_1101 (orn)
Ribosome biogenesis [BR:
pes03009
]
Eukaryotic type
Pre-60S particles
RNases
SOPEG_1101 (orn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Reo_sigma1
Motif
Other DBs
NCBI-ProteinID:
AHF73433
UniProt:
W0HMX9
LinkDB
All DBs
Position
complement(1124227..1124772)
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AA seq
181 aa
AA seq
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MPVNDNNLIWIDLEMTGLDPERDRIIEIATLVTDANLAILAEGPVLAIHQSDAQLALMDE
WNVRTHTASGLVDRVRHSQLDEEAAVAQTLAFLAEWVPAGKSPICGNSIGQDRRFLFRYM
PALEAYFHYRYLDVSTLKELARRWKPEILAGLKKKNTHQALDDICESVAELAYYREHFIR
L
NT seq
546 nt
NT seq
+upstream
nt +downstream
nt
atgccggtaaatgataacaacctgatttggattgatctggaaatgaccgggctggatccc
gagcgcgatcgcattattgaaatcgcgacgcttgtcaccgacgccaatctggctattctt
gcggaagggccggtgctggcgatacatcaatccgacgcccagttagcgctgatggatgaa
tggaatgtgcgtacccataccgccagcggactggttgaccgggtccgtcacagccaactg
gatgaagaggcggcggtggcgcagacgctggcctttttggccgaatgggtccctgccggc
aagtcgccgatttgcggcaacagcattggccaggaccggcgcttcttgttccgctatatg
ccggcgctggaagcgtatttccactaccgttatctggatgtcagtacgcttaaagaactg
gcccgccgctggaagccggaaattctggccggactgaagaaaaaaaatacccatcaggcg
ctggacgatatctgcgagtcggtggcggaattggcctactatcgcgagcattttatccgt
ctatag
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