Candidatus Sodalis pierantonius: SOPEG_1218
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Entry
SOPEG_1218 CDS
T03006
Symbol
rnr
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pes
Candidatus Sodalis pierantonius
Pathway
pes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SOPEG_1218 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pes03019
]
SOPEG_1218 (rnr)
03016 Transfer RNA biogenesis [BR:
pes03016
]
SOPEG_1218 (rnr)
Enzymes [BR:
pes01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SOPEG_1218 (rnr)
Messenger RNA biogenesis [BR:
pes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SOPEG_1218 (rnr)
Transfer RNA biogenesis [BR:
pes03016
]
Prokaryotic type
tRNA degradation factors
SOPEG_1218 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
Rho_RNA_bind
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
AHF73517
UniProt:
W0HM10
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All DBs
Position
1256384..1258909
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AA seq
841 aa
AA seq
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MSQDPFLEREAEKYAFPVPSREFILAHLAKREKPASREELAQELDISGEDQLEGLCRRLR
AMERDGQLIFTRRQCYALPERLDLLRGTVIGHRDGFGFLRVEGSKDDYYLSAEQMKMAIH
GDIVIAQPQGADRKGRREARIVRVLVPKTSQIVGRFFIDAGSAFVVPDDSRLSFDILIPP
EATQGARMGFVVVVELTQRPTRRTKAIGKVVEVLGDNMGTGMAVDIALRTHDIPYVWPLE
VEQQLANLKEEVPEAAKRGRIDLRALPLVTIDGEDARDFDDAVYCEKKRSGGWRLWVAIA
DVSYYVRPHTPLDQEASRRATSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMICEMTIS
AQGRLSSYKFYEAVMNSHARLTYNKVWQILQGQQELRNHYAPLIKPLTQLHEMYQTLEQA
RLQRGGISFETEEAKFIFNTERRIERIEPVKRNDAHKLIEECMILANIAAAHFVEKHKEP
ALYRVHDRPSNDHITSLRTVLGELGLTLGGGDKPEPKDYADMMNLVAGRPDHEMLQTMLL
RSMKQAIYDPENRGHFGLALQAYAHFTSPIRRYPDLALHRAIKYLLGRQNGDVDGRATPT
GGWHSELEEMLQLGQQCSLSERRADEATRDVADWLKCDFMQDHVGQVFSGIITSVTSFGF
FVRLDELFIDGLVHVSSLDNDYYRYDNIGQRLIGESGGRVYRLGDAVEIRVEAVHMDERK
IDFSLISSRRQPCGAGKSERQRQQQAARGANDGKPPRRRSSSKQPANFEPDSAFRPTGKG
GDKPGAGRGKGGHASSAPAKPSTEDTSRKKTSAEGATRNKAAGGKTRRRRKPAAASGRSE
N
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatccctttctggaaagagaggcagaaaaatacgcgttcccggtgccaagc
cgagaatttatcctcgcccatttagccaagcgggaaaagcccgccagccgcgaggagttg
gcgcaagaactggatatcagtggtgaagaccaactggaaggcttgtgccgccgcctgcgc
gcaatggagcgtgacgggcaactgattttcacccgtcggcagtgctatgcgctaccggag
cgtctggatttgttgcgcggtacggtcatcggccatcgagacggtttcggtttcctgcgc
gtcgaaggcagcaaggacgattattatttgtccgccgaacagatgaaaatggccattcac
ggcgatatcgtcatagcgcagccgcagggcgcggaccgcaaaggccgccgcgaggcgcgc
attgtgcgggtgctggtgccgaaaaccagccagatcgttggccgctttttcattgacgcc
ggcagcgctttcgtggtgccagacgatagccgtctcagtttcgatatcttgatcccgccg
gaagcgacccagggcgcccgcatggggttcgtggtagtggtggagctgacccagcgcccg
acgcggcgcaccaaagccatcggcaaagtggtggaggtgctcggcgataatatgggaacc
ggcatggcggtggatattgcgctgcgcacccacgatattccctatgtctggccgctggaa
gtcgagcagcagttggcgaatttaaaagaagaggtaccggaagcggccaagcgcgggcgt
atcgatttacgcgcgctacccttggtgaccatcgacggcgaggatgcgcgcgacttcgat
gacgcggtgtactgcgagaaaaaacgcagcggaggctggcgtctgtgggtggcgatagcc
gatgtgagctactatgtccggccgcatacgccgctggaccaggaagcgagccggcgcgcg
acttcggtctatttcccctcgcaggtgatcccgatgctgcccgaggtgctgtccaacggg
ctgtgctccctcaatccgcaggtggacaggctgtgtatgatctgtgagatgaccatttcc
gcccaggggcgtctctcttcctacaaattttatgaagcggtgatgaattctcacgcgcgc
ctgacttacaataaggtctggcagatcttgcagggccagcaggaattgcgcaaccattac
gcgccgctcatcaagccgctgacccaactgcatgaaatgtatcagacgctggaacaggcc
aggttgcagcgcggcggtatctcttttgaaaccgaagaggccaagtttatcttcaacacg
gagcgccgcatcgagcgtattgagccggtgaagcgcaatgatgcccataagcttatcgaa
gagtgcatgatcctggcgaatattgccgcggcgcactttgtcgagaagcataaagagccg
gcgctttatcgcgtgcatgaccggccaagcaatgaccatatcacctcgttgcgcacagta
ttgggcgaactggggctgaccttggggggcggcgataaacctgagcccaaagattatgcc
gatatgatgaatttggtcgctggccgtccggaccacgaaatgctgcaaaccatgctgctg
cgatcgatgaagcaggcgatttatgatcctgaaaaccgcggccacttcgggctggcgctg
caggcgtatgctcacttcacctcgcctatccgccgttatccggatcttgcgttgcatcgg
gcgatcaaatatcttctcggccgacagaatggcgacgtcgatggacgggccacaccgacc
ggcggttggcattccgaactggaagagatgttgcagcttggccagcaatgttcgctcagc
gagcgtcgcgccgatgaagcgacccgcgacgtggcggattggctgaagtgcgattttatg
caggatcacgttgggcaagtattcagcggcattattaccagcgtcaccagtttcggtttc
tttgtgcgtctcgatgagctgtttatcgacggcttggtgcatgtctcatcgctggataat
gattattatcgctatgacaacatcggccagcggctgataggcgagtccggcggcagggtg
taccggctcggggacgcggtagaaatccgcgttgaagctgtgcatatggacgaacgcaaa
atcgatttttcattgatttccagccgccgtcagccgtgcggtgccggcaaaagcgagcgc
cagcgtcagcagcaggccgcccgcggcgctaatgacggcaaaccgccgcgccgccgcagc
agcagtaaacagcccgccaattttgaacccgacagcgcattccggccgacagggaagggg
ggcgataaacccggcgcagggcgcggcaaaggcggtcacgcctcttcggcgccggccaaa
ccgtcgaccgaggacacttcgcgcaagaaaacctccgccgagggcgctacccgtaataaa
gccgctggcggcaaaacgcgccgccgtaggaaacccgccgcggcttccggtcgctcagaa
aactga
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