Candidatus Sodalis pierantonius: SOPEG_2547
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Entry
SOPEG_2547 CDS
T03006
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
pes
Candidatus Sodalis pierantonius
Brite
KEGG Orthology (KO) [BR:
pes00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pes03016
]
SOPEG_2547 (rnb)
Enzymes [BR:
pes01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SOPEG_2547 (rnb)
Transfer RNA biogenesis [BR:
pes03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SOPEG_2547 (rnb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
PilZ
ODP
Motif
Other DBs
NCBI-ProteinID:
AHF74241
UniProt:
W0HK49
LinkDB
All DBs
Position
complement(2694043..2695977)
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRVEGVVKGTEKGFGFLEVDAQKSYFIPPPFMKKVMHGDKI
TAVVRTEKDREIAEPEALIEPFLTRFVGRVQVKDERMTIVPDHPLMKEVIPTRPQRGVSQ
TFQTGDWAVAEMRRHPLKGDRQFYAEITALVATADDHFAPWWVTLARHNLERAAPEMLEG
IALQQEGPARDDLTTLDFITIDSASTEDMDDAIHLASAPDGAWVITVAIADPTAWLPAGS
PLDRIAHERAFTNYLPGFNIPMLPRTLSDDLCSLRAHERRSALACRVTVHHDGTLADDAR
FFTAWVESKAKLAYDHVSDWLENTGAWQPENDAIANQLRLLHDVCQARSAWRQHHALVFR
DRPDYRFVLDEKSNVDDIVVEPRRIANRMIEEAMIAANVCAARVLRDGLGYGLYNVHHGF
DPLLVDQAVAILRAHHIDVEPAELLTLEGFCALRRRLDALPTTYLDCRIRRFQTFAEVST
APGPHFELGLDAYATWTSPIRKYGDMLNHRLLKALIGVGDAERPGEEVTIRLAERRRQNR
MAERDVGDWLYARFLQPKAGSDSRFAAEIIDISRGGMRVRLLANGAVAFIPAPFIHSVRD
ELVCSQDTGTVQMKGEKRYRQGDTLDVTLAAVRMENRSVIARPV
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagacaatccgctgcttgctcagctaaaacagcaactgcattctcagacaccg
cgtgtcgaaggcgtggtaaaaggcacagagaaagggttcggcttcctcgaagtcgacgcc
cagaaaagctatttcattccgcccccctttatgaaaaaagtgatgcacggcgataaaatc
accgccgtggtccgcacggagaaagaccgggagattgcggaaccggaagcgcttatcgag
ccgtttttgacgcgttttgtggggcgggttcaggtgaaggacgagcgtatgaccatcgtg
ccggaccacccgctgatgaaagaggttattccgacgcggccgcagcgcggcgtcagccag
accttccaaaccggcgattgggcggtcgcggaaatgcggcgccacccgctgaaaggcgat
cgccagttttacgcggaaatcaccgcgctggtcgccaccgccgacgaccatttcgcgccg
tggtgggttaccctcgcccgtcataatcttgagcgtgccgcgccggaaatgctggaaggg
attgccctgcagcaagagggaccggcgcgcgacgatctcaccacgctggattttatcacc
atcgacagcgccagcaccgaagatatggacgacgccattcatctggccagcgcgccagac
ggtgcctgggtcataaccgtcgccatcgccgatccgaccgcatggctaccggccggcagc
ccgctggatcgtatcgcccatgagcgcgccttcaccaattacctgcccggtttcaatatt
cccatgctgccgcgcacgctatccgacgatctctgctcgctgcgcgcccacgaacggcgc
tcggcattggcgtgccgcgttacggtacatcatgacggcaccctggccgatgacgcgcgt
ttctttaccgcttgggtagaatccaaggccaaactggcctatgaccatgtttccgactgg
ctggaaaataccggcgcgtggcaaccggaaaacgacgctatcgccaatcagctgcgcctg
ctgcacgacgtttgccaggcccgcagcgcctggcgtcagcatcacgcgctggtgttccgg
gatcgccccgattatcgcttcgtgcttgatgagaaaagcaatgtggacgacatcgtcgtc
gagccgcgccgcatcgccaaccgcatgattgaggaggcgatgatcgccgccaacgtctgt
gccgcccgcgtattgcgcgacggcttgggctacgggctgtataacgtgcatcatggtttc
gatccgttgctggtggatcaggcggtagccatcctgcgcgcgcatcatatcgacgtggag
cctgccgaacttttgacgctggaagggttttgcgctctgcgccggcggctggacgccctg
cccaccacctatttggactgccgcatccgccgtttccaaaccttcgctgaagtcagcacc
gcgccgggcccgcacttcgagctagggttggatgcctacgcgacctggacctcgcctatc
cgtaaatatggcgatatgctcaatcaccgtctgttgaaggcgctgattggcgtcggcgac
gccgaacggccgggtgaagaggtgacgatccgcctcgccgaacgccgccggcaaaaccgc
atggcggagcgggacgtgggggattggctttatgcccgtttcttgcagccgaaagccggc
agcgacagccgcttcgctgcggagataatcgatatctcgcgcggcggtatgcgggtgcgt
ctgctggctaacggcgcggtggcgttcatccccgccccctttattcacagcgtacgcgat
gagctggtctgtagccaggataccggcaccgtgcaaatgaaaggcgagaagcgctaccgt
cagggcgataccctagacgttaccctcgccgcagtcagaatggaaaaccgctcggtcatt
gcccgcccggtctga
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