Candidatus Sodalis pierantonii: SOPEG_3138
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Entry
SOPEG_3138 CDS
T03006
Symbol
rnc
Name
(GenBank) ribonuclease III
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
pes
Candidatus Sodalis pierantonii
Pathway
pes03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pes00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
SOPEG_3138 (rnc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pes03019
]
SOPEG_3138 (rnc)
03009 Ribosome biogenesis [BR:
pes03009
]
SOPEG_3138 (rnc)
03036 Chromosome and associated proteins [BR:
pes03036
]
SOPEG_3138 (rnc)
Enzymes [BR:
pes01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
SOPEG_3138 (rnc)
Messenger RNA biogenesis [BR:
pes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SOPEG_3138 (rnc)
Ribosome biogenesis [BR:
pes03009
]
Eukaryotic type
90S particles
RNase
SOPEG_3138 (rnc)
Prokaryotic type
rRNA processing factors
SOPEG_3138 (rnc)
Chromosome and associated proteins [BR:
pes03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
SOPEG_3138 (rnc)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonucleas_3_3
Ribonuclease_3
dsrm
DSRM_2
RM44_endonuclase
DND1_DSRM
Motif
Other DBs
NCBI-ProteinID:
AHF74579
UniProt:
W0HL81
LinkDB
All DBs
Position
complement(3375539..3376219)
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AA seq
226 aa
AA seq
DB search
MNPILINRLQKKLGYTFQQHDLLLQALTHRSANSKHNERLEFLGDSILSYVIANALYQRF
PRVDEGDMSRMRATLVRGNTLAEMAREFELGECLRLGPGELKSGGFRRESILADTVEALI
GSVFLDSDIQTVEKLILDWYRTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPTYLVVQVR
GEAHDQEFTIHCQVSGLAQPVVGNGSSRRKAEQAAAEQALKLLELE
NT seq
681 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccatcttaataaataggctccagaagaaactgggctacacttttcaacagcac
gatcttttgttacaggcgttaacgcaccgcagcgccaacagcaaacacaatgagcggctg
gaatttttgggcgattctatattgagctatgttatcgccaatgcgctgtatcagcgtttc
ccacgcgtcgacgagggcgatatgagccggatgcgcgccacgctggtgcgcggcaatacg
cttgcggaaatggcgcgggagttcgagctgggcgaatgtttacgtctggggccgggagag
ctgaaaagcggcggtttccgtcgtgaatccattttggccgacacggtagaagcgttgatt
ggcagcgtgttcctggacagcgatattcaaaccgtcgaaaagctgatcctcgactggtac
cgcacacgtttggatgaaatcagccccggcgataagcaaaaagacccgaaaacccggctg
caagaataccttcagggacgccatttgccgctgcctacctatctggtggtgcaggtgcgc
ggcgaggcgcacgatcaggaatttaccatacactgccaggtcagcgggctggcgcagccg
gtggtcggcaatggctcaagccgtcgtaaagccgagcaggccgcggcggaacaagcactt
aaactgttggaacttgaatga
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