Peribacillus sedimenti: V1500_00200
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Entry
V1500_00200 CDS
T11238
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
pesi Peribacillus sedimenti
Pathway
pesi03030
DNA replication
pesi03430
Mismatch repair
pesi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pesi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
V1500_00200 (holB)
03430 Mismatch repair
V1500_00200 (holB)
03440 Homologous recombination
V1500_00200 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pesi03032
]
V1500_00200 (holB)
03400 DNA repair and recombination proteins [BR:
pesi03400
]
V1500_00200 (holB)
Enzymes [BR:
pesi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
V1500_00200 (holB)
DNA replication proteins [BR:
pesi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
V1500_00200 (holB)
DNA repair and recombination proteins [BR:
pesi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
V1500_00200 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNApol3-delta_C
AAA
DUF4473
Motif
Other DBs
NCBI-ProteinID:
XNY92392
LinkDB
All DBs
Position
39455..40462
Genome browser
AA seq
335 aa
AA seq
DB search
MVKTWQDLKSIQPEVMTMIKNSITRNRVAHAYLFEGEKGTGKKDIALIFAKSLLCEHPDE
GYIPCGQCVNCRRINSGNHPDLHYIEPEGLSIKKEQIKLLQDEFSKKSVESDLKIYMIVD
AEKMSVQAANSLLKFLEEPQSDTVAILITEQGQRVLPTILSRCQILPFKPLSPENVKKNL
IDQGVEPITASVISQLTHNFEEGLRMSSEEWFAQAQKIVLKLYEALQMNSMKSLLYLQEE
WFVHFKDKVQQDRGLDLLFLIYKDLLYIQLDQRNHIVFQNKISEYESHALHMSQKRLAEK
MRFILEAKRKLMSNTNPQLLMEQLVLNLQEGSSFV
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atggtaaagacctggcaggacctcaagagcatacagcctgaggttatgacaatgattaag
aatagcatcacaagaaatagagtggcgcatgcttacctttttgaaggagaaaaaggaact
ggcaaaaaggatattgcccttatttttgcaaagagccttctatgcgaacatcctgatgaa
ggttatatcccttgtggacaatgtgtaaactgcagacggattaattctggtaatcaccct
gatttgcattatattgagcctgagggcttatcgattaaaaaagaacaaataaaattattg
caggacgaattttctaagaagagtgtcgaatccgaccttaaaatttacatgattgtagat
gccgaaaaaatgtcggtacaggcagcaaatagcttattaaaattcctcgaagaaccccag
tctgatacagttgcaatactcattacagaacagggtcaacgggtattgccaactatatta
tcaagatgtcaaatattaccattcaaacccctttctcctgagaatgtaaagaaaaactta
atagatcaaggcgtagagcctattacggcctctgtcatttcccagctcacccacaatttc
gaagaaggacttcgaatgagttctgaggaatggtttgcacaagcccaaaaaatagtgtta
aaattatatgaagcattacagatgaattctatgaaatcattgttgtatcttcaagaggaa
tggtttgtgcactttaaggataaagtgcagcaagacagaggtcttgatttgttatttctt
atttataaggatttactatacattcagttggaccagcggaatcatattgtttttcaaaat
aaaatcagtgagtatgagtcacacgctcttcatatgtcacagaaacgcctggctgagaaa
atgcgctttattttagaagcaaagaggaagctgatgtccaatacaaatccacagctgctg
atggagcagcttgtgctgaatttgcaggagggatcatcatttgtatga
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