Peribacillus sedimenti: V1500_10300
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Entry
V1500_10300 CDS
T11238
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pesi Peribacillus sedimenti
Pathway
pesi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pesi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V1500_10300 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pesi03019
]
V1500_10300 (pnp)
03016 Transfer RNA biogenesis [BR:
pesi03016
]
V1500_10300 (pnp)
Enzymes [BR:
pesi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
V1500_10300 (pnp)
Messenger RNA biogenesis [BR:
pesi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
V1500_10300 (pnp)
Transfer RNA biogenesis [BR:
pesi03016
]
Prokaryotic type
tRNA degradation factors
V1500_10300 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
SPATA25
S1_2
OB_RRP5_4th
S1_RRP5
DUF3819
Motif
Other DBs
NCBI-ProteinID:
XNY94182
LinkDB
All DBs
Position
2095050..2097170
Genome browser
AA seq
706 aa
AA seq
DB search
MSQDKKTYSFDWAGRQLIVEAGQLAKQANGAVLIRYGDTAVLSTATASKEPKNVDFFPLT
VNYEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNDVQVISIVMSV
DQNCSSEMAAMFGSSLALSISDIPFEGPIAGVVVGRIDNEFIINPTAEQLENSDINLTVA
GTKDAINMVEAGANEVPEEVMLEAIMYGHEHIKQLIEFQEQIASEIGKEKLEIKLYEIDA
ELTAEIKAACEQDINTAVQVQEKHARESAIKEVKDRIIAEYEEKEADEQQLKQVKEILNK
LVKNEVRRLITEEKVRPDGRNPDEIRPLSSEVGLLSRTHGSGLFTRGQTQALSICTLGAL
GDVQILDGLGTEESKRFMHHYNFPQFSVGETGPIRGPGRREIGHGALGERALEPVIPAEK
DFPYTMRLVSEVLESNGSTSQASICASTLALMDAGVPIKAPVAGIAMGLVKSGEHYTILT
DIQGMEDHLGDMDFKVAGTSKGVTALQMDIKIEGLSREILEEALLQAKKGRMHILDSMLS
TIEQPRGELSRYAPKILTMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISS
VDEEMNQKAKKIIEDIVREVEVGQMYLGKVKRIEKFGAFVEIFNGKDGLVHISELAEERV
GKVEDVVSIGDEILVKVTEIDKQGRVNLSRKAVLKEQKESANNPES
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaggataagaaaacttattcattcgactgggccggaaggcagctgattgtcgaa
gcagggcaattggctaagcaggctaacggggcagtccttataagatatggagacacagct
gttttaagtacggcaacagcttccaaggaacctaaaaatgtagattttttcccgctgaca
gtcaattatgaggaaagattatatgcggtagggaaaatccctggagggtttattaagcgt
gaaggaagaccaagtgaaaaagccatcttggcgagccgcctgattgaccgtccgatccgc
cctttgtttgcggacggattcagaaacgatgtacaggtaatcagcattgtgatgagcgtt
gatcaaaattgctcatctgagatggctgcgatgtttggttcctcactagctttaagcatt
tccgacatcccatttgaaggacccattgcaggtgtcgtggtaggtcgtatagacaatgaa
ttcattattaatcctactgcagagcaattggaaaacagcgacataaatttaaccgtcgct
ggcacaaaggatgccatcaacatggttgaagcaggcgctaatgaagttcctgaggaagtg
atgcttgaagccattatgtatggacatgaacatattaagcagctgatagaattccaggag
cagattgcttcggaaattggcaaagagaagttggaaataaaactatatgagattgacgca
gaattaacagccgaaattaaggctgcctgtgaacaagacattaacaccgcggtccaggtg
caggaaaagcatgcccgggaatcagcaattaaagaagtaaaagaccgtatcatagccgaa
tatgaggaaaaagaggccgatgaacaacagcttaagcaagtcaaggaaatattgaataaa
ttagtcaaaaatgaagtgcgccgcctaataacagaagaaaaagtacgtcctgatggccgt
aaccctgatgaaatcaggccgctttcttcggaagtagggcttctgtcgcgtactcatggg
tccggcttattcacaagaggacaaacacaggccctatcaatttgtacattaggggcactg
ggagatgtccagattttggatggtctggggacggaagaatcaaaaagatttatgcaccat
tacaacttccctcaattttctgtaggagaaacaggtccaatcagggggccgggacgcaga
gaaattgggcatggtgcattgggtgagcgtgcacttgagccagtcatacctgctgaaaag
gattttccttatactatgcgattagtttctgaagttctggaatccaacggttctacttca
caggctagtatttgcgcaagtacattggcattaatggatgctggtgtaccgattaaggct
cctgtcgcaggtattgcaatgggtcttgtaaaatcaggagaacactacacaattcttact
gatattcaaggtatggaagaccatctgggagatatggattttaaagttgccggtacttcc
aagggagtaaccgcactccagatggacattaaaattgaggggctatccagagagattctt
gaagaagcattacttcaggctaaaaaaggccgtatgcatatcctggattccatgctttcc
actattgagcagccgcgtggagaattgagccgttatgcaccaaaaatactaactatgacc
ataaatccggataaaatccgtgacgtcattggaccaagcggtaaacagatcaacaaaatc
attgaagagaccggcgtaaagattgatattgagcaggacggaacagtatttatttcatct
gtggatgaagaaatgaatcagaaggccaagaagatcattgaagatattgttcgcgaggta
gaggttggccaaatgtatctaggcaaagttaagcgtatagagaaatttggggcctttgta
gaaatcttcaatggcaaggatggtctagtccacatttctgaacttgcagaagagcgagtc
ggcaaggtcgaagatgtcgtctccataggagatgaaattctcgtaaaggttacagaaatt
gacaaacagggaagagtaaatctctccagaaaagcagtactcaaagagcaaaaagaatcg
gccaataacccggaaagttaa
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