Peribacillus sedimenti: V1500_18245
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Entry
V1500_18245 CDS
T11238
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pesi Peribacillus sedimenti
Pathway
pesi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pesi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V1500_18245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pesi03019
]
V1500_18245
03400 DNA repair and recombination proteins [BR:
pesi03400
]
V1500_18245
Enzymes [BR:
pesi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
V1500_18245
Messenger RNA biogenesis [BR:
pesi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
V1500_18245
DNA repair and recombination proteins [BR:
pesi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
V1500_18245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Cas3-like_C_2
Rhodanese
Motif
Other DBs
NCBI-ProteinID:
XNY91169
LinkDB
All DBs
Position
complement(3715356..3716885)
Genome browser
AA seq
509 aa
AA seq
DB search
MNLEEALYKYFGYTSFRPGQREIIESVLKGSHTLGMLPTGTGKSLCYQLPSYLMSKPALI
VSPLLSLMQDQAEHLKVMGEKSVLALNSFLSIAERRRGLEELHKYRFIFVSPEMLSIDHV
LAAIQRLDIGLFVIDEAHCISQWGYDFRPDYLRLGEVRKKLNCPLTLALTATASEEVRLD
IISKLGLEHVEQVISSVDRANIALSIEICQSHQEKQDRLLEMARELDGSGIIYFSSKKAA
ESAAAFLQESGIPNVEFYHGGMESEQRMLIQQQFIIGQVRIICATSAFGMGINKQDVRFV
IHFHLPSSMESYLQEIGRAGRDGKQSIAVLLYCAGDEGLPALLMEQELPTDVQIESVLAY
LALNKVDLDRIPKNVHEIIYGQYSLSETQWRFMNFFISSNRTNLSMAEIIEAMKHYVKER
IAYKNKQLQGFLKWLTANSCRREGVLLHFGEKEAITRPKFCCDRCGLGEGLFSSISELAD
RTPIKLTYEGWRQDLENILVKKREQKHEE
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgaggaagcactgtataaatactttggatatacgtcatttcgccccgggcaa
cgggagattatcgaatctgttcttaaaggaagccatactctgggaatgctgcccacgggc
acaggtaaatccctttgttatcaactgccctcctatttgatgtcaaagcctgccctcatt
gtctcaccgcttctgtcccttatgcaagaccaggcagaacaccttaaggtaatgggggaa
aaaagtgtcctggccttaaattcctttttaagcattgctgagagaaggaggggcttggag
gaactccataaatatcggtttatttttgtttctccagaaatgctgtccatagaccatgta
ctcgctgccatacagagactggatattgggttatttgttatagatgaagcacactgtata
tcacaatgggggtatgacttccgtcctgattacttgcgtttgggagaggtgcgaaagaaa
cttaactgcccattgaccctggctctgaccgctacggcgagcgaggaggtccgtttagat
atcatttccaaacttggtcttgaacatgtcgagcaggttatatcctctgttgatcgtgca
aatattgctctcagtattgaaatatgccagagtcatcaagagaaacaggataggctgctg
gaaatggcccgggagttggatggttccggaatcatttatttctcgagcaagaaggcagca
gaatcggcagctgcttttttacaggaaagcggaatcccaaatgtcgagttctatcatgga
ggcatggaatctgaacaaaggatgctgatacagcagcagtttattattgggcaggttcgc
attatttgtgcaaccagtgcattcggaatgggtatcaataaacaagatgtgagatttgtc
attcatttccaccttccttccagtatggaatcctacttgcaggaaatagggagagccggg
agggatggcaaacaaagtattgctgtcctgttgtattgtgcaggggatgaaggattgcca
gctcttttgatggaacaggagctgccgaccgatgttcaaatcgaatctgttctcgcgtat
cttgccttaaataaagttgatttggacaggattccaaagaatgtacatgagattatttac
ggtcaatattcgctgtctgaaactcaatggagattcatgaatttttttatttcgtccaat
cgtacaaatctcagtatggcagaaataatagaggccatgaaacattatgtaaaagagagg
attgcttataaaaacaaacagcttcaaggttttttaaaatggcttactgcaaattcctgc
agaagagaaggggttttgcttcactttggagagaaagaagcaataacaagaccaaagttc
tgctgcgaccggtgtggtctgggagagggattattttcatcaatatctgaactggctgac
cgtacacccataaaactaacttacgagggctggagacaggacctagaaaatatacttgta
aaaaagagagaacaaaaacatgaagaataa
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