Peribacillus sedimenti: V1500_19320
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Entry
V1500_19320 CDS
T11238
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
pesi Peribacillus sedimenti
Pathway
pesi03030
DNA replication
pesi03430
Mismatch repair
pesi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pesi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
V1500_19320 (holA)
03430 Mismatch repair
V1500_19320 (holA)
03440 Homologous recombination
V1500_19320 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pesi03032
]
V1500_19320 (holA)
03400 DNA repair and recombination proteins [BR:
pesi03400
]
V1500_19320 (holA)
Enzymes [BR:
pesi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
V1500_19320 (holA)
DNA replication proteins [BR:
pesi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
V1500_19320 (holA)
DNA repair and recombination proteins [BR:
pesi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
V1500_19320 (holA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_delta_C
DNA_pol3_delta
HP_1247_M
FlgT_C
DUF1848
Motif
Other DBs
NCBI-ProteinID:
XNY91372
LinkDB
All DBs
Position
complement(3926826..3927842)
Genome browser
AA seq
338 aa
AA seq
DB search
MVIEVWKNIKRKQLAPVYLIYGTEAFLINETRQLLLENALSDDEIDFNLSQIDLEETPIE
TALEDAETLPFMGERRLVFMQNPFFLTAEKSKSKVEHNIKKLEEYIANPAPYSIIALVAP
YEKLDERKKITKELKQRAAVIEAKKLNEHEIRAWIKERASLSNVQILDEAIDMMLELAGT
NLMLLTNELDKLSLYVDEGKTIDREMVEQLVAKSLEQNIFTLVDKFLQRDLTGAVQIYHE
LLRQNEEPIKILGFMASQVRLMYQVKALAKQGYSQQKIAGALKIHPYRVKLALEKTGRFN
ERELLSLIHDFAEADYKMKTGQLDKAIALELLFLKSRP
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
gtggtaatagaagtgtggaaaaacattaagagaaaacaacttgctccagtttacctaata
tatggaactgaagctttcctgattaatgaaacaagacagctgttacttgagaatgcatta
tcggatgatgaaatagattttaacttatctcaaattgatcttgaagaaactcccatagaa
acagccttggaggacgctgaaaccctgccattcatgggggagaggcgtcttgttttcatg
cagaacccgttttttctaactgctgaaaagtcaaaatccaaggtagaacataatatcaag
aagcttgaggaatatatagccaaccctgctccatattctattattgctttagttgcgcct
tacgaaaaactcgacgagcggaaaaaaatcacaaaagaattaaagcagcgggcggcagta
atagaagcgaaaaaattgaacgaacatgaaataagggcatggatcaaggaaagggcttca
ttatccaatgtccaaattctagatgaagccatagatatgatgctcgagcttgcaggcaca
aatttaatgcttctcacaaatgagctggataaactgtccttatatgtggacgaaggaaaa
acgatagaccgcgaaatggtagaacagctagtagccaaatcgttagaacagaacattttt
acactggtagataaattcctgcaacgggatttgacaggagctgtgcaaatttatcatgag
ctcctccggcaaaatgaagagccaatcaaaatacttggttttatggccagtcaggtacgc
ttaatgtatcaagtgaaggcattggcaaaacaaggatacagccagcaaaaaatagctggt
gcgcttaagattcatccataccgggtgaaattggccctcgagaagacaggcaggtttaat
gagagggaattactgtccttaatacacgattttgctgaagcggactataagatgaagact
ggccaattagataaggcgattgctctggaactgctgttcttgaaatcaaggccataa
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