Peribacillus sedimenti: V1500_20385
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Entry
V1500_20385 CDS
T11238
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pesi Peribacillus sedimenti
Pathway
pesi03030
DNA replication
pesi03430
Mismatch repair
pesi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pesi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
V1500_20385 (dnaE)
03430 Mismatch repair
V1500_20385 (dnaE)
03440 Homologous recombination
V1500_20385 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pesi03032
]
V1500_20385 (dnaE)
03400 DNA repair and recombination proteins [BR:
pesi03400
]
V1500_20385 (dnaE)
Enzymes [BR:
pesi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
V1500_20385 (dnaE)
DNA replication proteins [BR:
pesi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
V1500_20385 (dnaE)
DNA repair and recombination proteins [BR:
pesi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
V1500_20385 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
Motif
Other DBs
NCBI-ProteinID:
XNY94774
LinkDB
All DBs
Position
complement(4156978..4160343)
Genome browser
AA seq
1121 aa
AA seq
DB search
MRYLFVNLHVHSAYSLLTSTVKIDELVSEAKDRGYSAIALTDRNVVYGILYFYKECMKHG
IKPIIGVTADILDENDTPYPLILLARDNIGYRNLMKISSAIKTKSPSGLPMKWLKPYSEG
LIAISPGYEGKIEKQLLEGDSVGAKKTAELFSRLFGEGHFYLSIQQLSMPKEEELLAQTL
RLAQESSIKVIATNPVYYINKEDSLAQEVLLAVKNGEKLSDEERTRLPSHEFYLKSTKEM
VQLFRNYPDALENTLDLANKCTVEIEFNRKLLPKFPVPDGITADEMLEKICQDGLKRRAP
EDMPAYMERLHYELEIIKRMKFSHYFLIVWDFMRFARKKHILTGPGRGSSAGSMVAYVLE
ITNVDPLEHNLLFERFLNPERISMPDIDIDFPDNRREEVISYVASKYGEFHVAQIITFGT
LAAKAAIRDTGRVFGLNPKEQESLSKMIPSRLGITLKTALDESRSLRAYIEESEWNKRLF
ETALKIEGLPRHTSTHAAGVVISDMQLTDIIAIQEGHEGVHLTQFPMDLLEELGLLKMDF
LGLRNLTLLENIVSNIRRGANENINIASIPLDDEETYLLLSKGDTTGVFQFESDGIRKVL
TRLQPSTFEDIVAVNALYRPGPMDNIPLFIERKHGLRQVEYPHPVLQDILGNTQGVIVYQ
EQIMQIASKMAGFTLGEADLLRRAVSKKKREILNQEREHFVNGCLEQGYEASTANEIYDL
IVRFANYGFPRSHAVAYSMIAYQLAYLKEHYPQYFMAALLTSVIGNDDKIAQYVTEAKNK
GITVLQPSINTSHYAFTAGNDGIRYSLGAIKGIGAAVLKEIFQARRNKKFEDLFDFCMRV
SGKVVNRKILESLVHAGAFDEFGQDRAVLLASLDVAMNHAEFVNPEDDQFELFSNEEFSL
KPKYVEVEKIRMEDKLYFEKSVLGLYLSNHPVKAYRDIFKHYGAATMDLSSTAESKVLAG
VYIVSLKTIRTKKGEVMAFLTISDEGGDLEAIAFPNVYKMYSPLFNNGNILMIIGSIEER
DGKKQIIIQEAYSLEELKKGMDSDTSCVFIRIKAEMQTNQVLNSVKKVLLQHRGRTKVML
YYEREARYVQLSFLDWVSPSEALFHKLKKIAGDQNVVFKKN
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
gtgagatatttgtttgtaaatcttcacgttcatagtgcatacagtctgctaaccagtaca
gtcaagatagatgagctcgtatctgaagcaaaggacaggggctattcagctattgcttta
acagacagaaatgtggtgtatggcatcctttacttttataaggaatgtatgaaacatgga
ataaaaccgatcataggggtcacagccgatatcctggatgaaaatgatacaccttatcct
ctcattcttttggcaagagataatattggctacagaaatttaatgaaaataagttccgcg
atcaagactaaatctccttccggccttcccatgaaatggctcaaaccatattcggaaggc
ctcattgccatttctcctggttatgaggggaaaattgaaaaacagctcttggagggagat
tcagtcggggcaaaaaaaacggcagaactatttagccgtttattcggggaagggcatttt
tatctttctatccagcagctatccatgcctaaagaggaagaattgctcgcccaaacactc
agactggcgcaagaaagcagcattaaagtgatcgcgacaaatcctgtttattacattaat
aaagaggacagtcttgctcaggaggtgcttcttgccgtcaaaaatggagaaaagctttcg
gatgaagaaagaacgcgacttccatcgcatgaattctacttaaaatcaaccaaagaaatg
gtccagctgttccggaattatccggatgcattggaaaacacattggatttagccaataaa
tgcactgtagaaatagaatttaaccgaaagctgcttccgaaattccctgttccagacggt
ataactgcagatgagatgctggagaaaatctgccaggatggcttaaaacggcgagcgccg
gaagatatgccggcatatatggaaagactgcattatgagcttgaaatcataaagagaatg
aagttcagtcattacttcctgatagtctgggactttatgaggtttgccaggaaaaaacat
attctgacgggaccggggagaggatcttccgcaggatcgatggttgcctatgtgctggag
attacaaatgtagatccgctggagcataatttgctgtttgagagatttttgaatccagag
cgaatctcaatgccggatatagacatagatttcccagataaccgaagagaagaagtcatt
tcctacgttgcctccaaatacggagaatttcacgttgctcagatcattaccttcggaacc
cttgctgcaaaagcggcaattcgggatacaggcagggtttttgggctgaatccaaaggaa
caggaaagcttatcgaaaatgattccatcaaggctgggaatcacgcttaagacagctctg
gacgaatcaaggtctttacgggcttatatagaggaaagcgagtggaataaaagacttttt
gaaactgcattaaagattgaggggctgccccggcacacttccacccatgctgccggtgtt
gtaatcagcgatatgcagcttactgatatcatcgcaatccaggaggggcacgaaggggtg
catctaacccagttcccaatggaccttctcgaggaattgggattgttaaagatggatttc
ctgggtctgagaaacctgactctccttgaaaacattgtgtccaatatcaggagaggagca
aatgaaaatattaatatagcatccattcccctggacgatgaagaaacctatcttctgctc
agtaaaggagataccacaggagtattccaatttgagtcggacggcatcagaaaggtgttg
acaaggcttcagccctctacttttgaagatatagtcgctgtaaatgctctgtataggccg
ggtcctatggacaatatacctctcttcatcgaacggaaacatgggttaaggcaggtggag
tacccccatccggttcttcaagacatattgggcaacactcagggagtcattgtctatcaa
gagcagataatgcagattgcctccaagatggcggggtttaccttgggagaggctgacctg
cttcgccgggcagtttccaaaaagaagagagaaatacttaaccaggaacgcgaacatttt
gtgaacggctgtttggaacaaggctacgaagcatcaactgcaaatgaaatttatgacttg
attgtaagattcgccaattacggattcccaaggagccatgcagttgcatacagcatgatc
gcctaccagctggcctacctgaaagaacattaccctcaatacttcatggcggcactattg
acttccgtgatagggaacgacgataagatcgcccaatatgttacagaagcaaagaataaa
ggaattactgttctgcagccatctattaacacaagccattacgcttttacagcaggaaac
gatggaatccgttacagcctgggagcaattaagggaattggagccgctgtgctcaaagag
atttttcaagccaggaggaacaagaagttcgaggacttattcgatttttgcatgcgtgtc
tcagggaaggttgtcaatcgtaaaatccttgaatccctcgtacatgctggtgcttttgat
gaattcgggcaggacagggcagtattgcttgcaagtctggatgttgcgatgaaccatgca
gaatttgtcaatccggaagatgatcaatttgaattgttcagtaatgaggaattttccctg
aagccgaagtacgtggaagtggaaaaaatcaggatggaagataaactctatttcgaaaaa
agtgtgttaggtctttatctatccaatcatcctgttaaagcttatcgcgatatctttaag
cattatggagcagcaaccatggatctttcaagcactgcagaatccaaagttctggcaggt
gtctatattgtgtccttaaaaacgatccggacaaagaaaggggaagtcatggcattcctc
acgatttcagatgagggcggcgacttagaagccattgcctttccaaatgtatacaaaatg
tattccccattattcaataatggcaatatccttatgataatcggcagcattgaggaacgg
gatgggaaaaaacaaataatcatccaggaagcctattcgctcgaggaactaaaaaaaggg
atggatagcgacacttcctgcgtgtttataaggattaaggcagaaatgcagacgaaccag
gtgctaaacagtgtaaaaaaggtgttgttgcagcatagaggcaggaccaaggtaatgctc
tattatgaaagagaagccaggtacgtccagctatctttcctggattgggtatctccatcg
gaagctttattccataagcttaaaaaaattgcaggggaccaaaacgtcgtttttaaaaag
aattaa
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