Peribacillus sedimenti: V1500_20725
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Entry
V1500_20725 CDS
T11238
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
pesi Peribacillus sedimenti
Brite
KEGG Orthology (KO) [BR:
pesi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pesi03016
]
V1500_20725 (thpR)
Enzymes [BR:
pesi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
V1500_20725 (thpR)
Transfer RNA biogenesis [BR:
pesi03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
V1500_20725 (thpR)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
XNY91636
LinkDB
All DBs
Position
complement(4234310..4234873)
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AA seq
187 aa
AA seq
DB search
MTNFFFALTLPDETKTYIDNIITNLKKQLPFKKWLHPQDYHITLAFLGNTEEGMRRKAEK
LVEEAIEPLGEFSLTVTDIGTFGPVHAPRILWLGVEHSNSLLELQKKTYAASEQAGFILD
KKPFKPHITVARKYIGDIPYQIEKSQDLTMLQRGEHVFRASQVTLYKTHMGASPSYEPIF
TVPLKKS
NT seq
564 nt
NT seq
+upstream
nt +downstream
nt
atgacaaatttcttttttgccttgactttgcctgatgaaactaaaacatacattgataac
attataacgaaccttaaaaagcagcttccctttaaaaagtggctgcatccgcaggattac
catattacattagcgtttcttgggaatacagaggaaggaatgagaaggaaagctgaaaag
ctggttgaggaggctatagagcccctaggggaattctctttaacagtaaccgacattggt
acatttggcccggtacatgcgccaaggattttatggctgggtgtagagcatagcaatagc
ctccttgaattgcagaaaaaaacctatgctgccagtgaacaggcaggctttattctcgat
aaaaaaccttttaaaccgcatataacagtggccaggaaatacataggggatatcccatat
cagattgaaaagagccaggacttaaccatgctgcaaagaggagaacacgtctttcgggcg
tcacaggttactctgtacaaaacccacatgggtgcttcaccctcctatgaacccattttt
acagtacccttaaaaaaatcataa
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