Peribacillus sedimenti: V1500_22105
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Entry
V1500_22105 CDS
T11238
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
pesi Peribacillus sedimenti
Pathway
pesi02020
Two-component system
pesi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pesi00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
V1500_22105 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
V1500_22105 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pesi03021
]
V1500_22105 (rpoN)
Transcription machinery [BR:
pesi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
V1500_22105 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_17
HTH_Crp_2
LacI
HTH_23
HTH_Tnp_ISL3
Fe_dep_repress
HTH_3
MarR_2
Sigma70_r4_2
HTH_AraC
Sigma70_r4
HTH_26
HTH_IclR
Phage_terminase
PfkB
HTH_24
HTH_Tnp_4
Motif
Other DBs
NCBI-ProteinID:
XNY91863
LinkDB
All DBs
Position
complement(4491703..4493034)
Genome browser
AA seq
443 aa
AA seq
DB search
MMKAGLFQYQTLKLTMTQDLSQAIALLQYSSQELSAFLENKSMENPLLSLNQSHTQALRS
DYGSKKRKSNKVLKSDSNSKNWIEQIGQETSSLEEHLLSQLDLKAISEPGVRLFRQMIRN
LDENGYLRINVDEAAAITGFPETDIEECIALLHELEPPGIGARHLKECLLIQIRRDGNRL
AERIISEDFFLFADKKWKQLSKKLSVPVGEIQKAYDYIKTLNPRPGAVFYNEKAAYITPD
VTVEYKNNEYSISLYEAHSSGVSLNEGYFNQMKSHGDSKVDQFLQEKWQEYQWISRAITQ
RRETILNVMKIIVKRQGKYFSSGPSFLLPMTMKDVADELGVHESTVSRAVKDKYVQTSFG
TVEMRCFFTSTLQAADHDISSETAKHAIQAIIKSENKLKPVSDQDVCNILKDSQGIILSR
RTVAKYREQLGIPSSSKRRRYEN
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgatgaaggcgggactatttcagtatcaaacattaaagttgacgatgacccaggattta
agccaggcgattgcgctcttgcagtattcttcccaggagctatccgcttttttggagaat
aaatctatggaaaacccgctattatcgctgaatcaatcccatacacaggcactgcgctcc
gattatggctcaaaaaaaagaaagagtaacaaagtgcttaaaagcgattcgaactcaaag
aattggatcgaacaaattggccaggagacttcaagcctggaggaacacttactgtcccaa
ttagatttgaaggcgatttcagagcctggtgtgaggctctttaggcaaatgattcgtaac
cttgatgaaaatggttacttgcgaatcaatgtggatgaggctgcagcaatcactggattt
ccggaaacggatatcgaggaatgtattgctctgcttcatgaactggagccgccaggcatt
ggagcacgacatctgaaggaatgcctgcttatacagatacgcagggacggtaataggctt
gctgaaagaatcatttctgaggatttttttctgtttgccgataagaaatggaaacagctc
tccaagaaattgtctgtgccagtcggtgaaatccaaaaggcgtacgattacataaagact
ttaaatcctaggccgggtgccgttttttataatgaaaaggctgcttatataactcctgat
gttacagtggaatataagaacaacgaatactccatttctctttatgaggcacattcatca
ggggtaagccttaacgaaggttattttaatcagatgaagagccacggagactcaaaggtc
gatcaattcctgcaggaaaagtggcaggaatatcagtggatttcgcgagcgataacccaa
aggcgggaaaccatcctgaatgtgatgaaaatcatagtcaagagacagggaaaatacttt
agtagcggcccttcctttttattgcccatgacgatgaaggatgttgcagatgaactgggc
gtccatgaatcaacggtaagcagggccgtgaaagacaagtatgttcagacctcctttggg
acagttgaaatgaggtgtttcttcacctcgacactgcaggcggccgaccatgatatttcg
tctgaaacagccaagcatgctatccaggccatcataaaatcagaaaataaactaaaaccg
gtttccgaccaggatgtctgcaatatactcaaagatagccagggaatcatcctttcaagg
agaacagttgcaaagtaccgtgaacagcttgggattccatcatcctcaaagcggagacgg
tacgaaaattga
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