Peribacillus sedimenti: V1500_23870
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Entry
V1500_23870 CDS
T11238
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pesi Peribacillus sedimenti
Pathway
pesi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pesi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V1500_23870 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pesi03021
]
V1500_23870 (rho)
03019 Messenger RNA biogenesis [BR:
pesi03019
]
V1500_23870 (rho)
Transcription machinery [BR:
pesi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
V1500_23870 (rho)
Messenger RNA biogenesis [BR:
pesi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
V1500_23870 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
NACHT
ATPase_2
AAA_22
AAA
AAA_25
Motif
Other DBs
NCBI-ProteinID:
XNY92189
LinkDB
All DBs
Position
complement(4891448..4892740)
Genome browser
AA seq
430 aa
AA seq
DB search
MNLTISNLENMKLKDLYELAREYKVSYYSKLTKKELIFAILKAQAEQDGLLFMEGVLEII
PSEGFGFLRPINYSPSSEDIYISASQIRRFDLRNGDKVSGKVRPPKENERYYGLLHVEAV
NGDNPESAKERVHFPALTPLYPDRQIKLETVPKNLSTRIMDVLAPVGFGQRGLIVAPPKA
GKTMLLKEIANAITTNHPEAELIVLLIDERPEEVTDIERSVAGDVVSSTFDEVPENHIKV
AELVLERAMRLVEHKRDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFG
AARNIEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNMELHLDRALAERRIFPAIDIRR
SGTRKEELLIPKDHLDKLWAIRKTMSDTPDFAEKFLRRLRQTKGNEEFFSRLEEEMKKGA
AAGVKRSSSQ
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaacaatttccaatcttgaaaacatgaaactgaaggacctatatgagcttgca
cgtgagtataaggtatcttattacagcaaacttacaaaaaaggaacttatttttgccatt
ttaaaagcgcaggctgaacaggatggtctattgttcatggaaggcgtacttgaaatcatc
ccttcagagggctttggtttccttcgccccatcaactattctcctagctcggaggatata
tatatttccgcttcccagattcggagatttgacctaaggaacggcgataaggtatcagga
aaagtacgtcctccaaaggaaaatgaacggtactacggtctgttgcatgtagaggctgta
aatggggacaacccagagtcagctaaggaacgcgtgcactttccggctcttactccgctg
tatccggacagacaaatcaagctggaaacggttcctaaaaacctgtctacaaggatcatg
gacgtactggcaccggttggatttggacagcgtggtttgatagtggccccgcctaaggca
ggtaaaacgatgttgctgaaggaaattgcaaatgctatcacgaccaatcatcctgaggct
gaattaatagttctattaatcgacgaacgccccgaagaggttacagatattgagcgttca
gttgcaggtgatgttgtaagctctacctttgatgaggtccctgaaaaccatattaaggtg
gctgaactggtgctggagagggcgatgcgcctcgttgagcataagagagatgtcattatt
ttaatggatagcattacccgccttgcacgtgcttataacctagtaattcctccgagtgga
agaactctttccggaggtatcgatccggctgccttccacaggccgaaacggttctttgga
gctgcaaggaacattgaagaaggcggaagcttgacgattttggctacggcactggtagat
accggatctcgcatggatgatgttatttacgaagaattcaagggtacaggcaacatggag
ctgcatctcgatcgggcacttgccgaaagaaggatattcccggcaatcgatatccggcgt
tccggtacgcgtaaagaagaacttcttattccaaaggatcatctggacaagctctgggcc
atccgcaagacaatgtcagatactccggactttgccgagaagtttcttcgccgcctaagg
cagaccaaaggcaatgaggaatttttcagcaggctggaagaagagatgaaaaaaggggct
gcagcaggagtcaaacgcagcagcagccaataa
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