Paraperibacillus esterisolvens: V1501_01310
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Entry
V1501_01310 CDS
T11219
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pest Paraperibacillus esterisolvens
Pathway
pest03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pest00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V1501_01310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pest03019
]
V1501_01310
03009 Ribosome biogenesis [BR:
pest03009
]
V1501_01310
Enzymes [BR:
pest01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
V1501_01310
Messenger RNA biogenesis [BR:
pest03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
V1501_01310
Ribosome biogenesis [BR:
pest03009
]
Prokaryotic type
rRNA helicases
V1501_01310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
DeaD_dimer
AAA_22
Motif
Other DBs
NCBI-ProteinID:
XNY72719
LinkDB
All DBs
Position
238193..239671
Genome browser
AA seq
492 aa
AA seq
DB search
MTLFSELGLDKSTLRSIEKMGFEEATPIQAQTIPLAIQGEDIIGQAQTGTGKTAAFGIPL
MEKIDIKEDQIQSICIAPTRELAIQVSEELYKLGFGKRVRVMAVYGGQDIDRQIRALKKK
PHIIVGTPGRLLDHINRKTIRLGNVSTVVLDEADEMLNMGFIEDIESILSTVPEENRQTL
LFSATMPEPIRKIAEKFMSEPKVVKVKAKEMTVSKIKQSFIEVKESEKFDTLTRLLDIQT
PELAIVFGRTKRRVDELSSALNVRGYMAEGIHGDLSQAKRLSVLKKFKEGNIDVLVATDV
AARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGEAVSFVTYRERSQLYAIENTT
KKRMDKMQPPTLSEAVEGQQKAVMEKIVSAVEGEDSSLYQATAEELLNKYEAKDILASVI
KLMTKEPDQTPIKLTEEAPAFSKRGRGGDRGGSRSGRGQTSTGGGRREYGQKRGRKPAGR
GGQGASKREKQY
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
ttgactttgtttagtgaattaggacttgataagtccacattaagatcaatcgaaaaaatg
gggtttgaagaagcaaccccaatccaggcccaaacgattcctcttgccatccaaggggag
gatatcattggccaggcacagacaggtacaggtaagacagcagcttttggtattccgttg
atggagaaaatcgacatcaaagaagaccagatccaaagcatctgtattgctccaacacgt
gagcttgccatccaggtttctgaagaattgtacaaacttggcttcggaaaacgcgtacgt
gttatggcagtatacggcggacaggatattgaccgccagatccgtgcccttaagaaaaaa
ccgcatatcattgtaggtacgccaggaagactccttgaccacatcaaccgcaagacgatc
cgcttagggaatgtcagcacggtagtccttgatgaagcggatgaaatgctgaacatggga
ttcatcgaagatatcgaatcaatcctgtctacagttcctgaagaaaacagacagactctg
ttattctcagctacaatgcctgaaccgatcaggaagattgctgaaaagttcatgagcgaa
ccgaaagtggttaaagtgaaagcgaaggaaatgactgtttccaaaatcaagcagtcattc
attgaagtgaaggaaagcgaaaagttcgatacgcttacccgcctgctcgatatccagact
ccggagcttgcgatcgtatttggacgtacaaaaagacgtgttgatgaactgtcatctgca
cttaatgtaagaggctatatggcagaagggatccacggagacctgagtcaggctaagcgt
ctgtctgttcttaagaaattcaaagaaggaaacatcgatgtattggtagcgactgacgta
gctgcccgcggacttgatatttcaggcgttacacatgtttacaactttgacattcctcag
gacccagaaagctatgttcaccgaattggacgaacagggcgtgcaggcaaaacaggtgaa
gctgtttcatttgtaacataccgtgaaagatcccagttgtatgcaatcgaaaatacaacg
aaaaagcgtatggacaaaatgcagccgccaaccttgagcgaggctgttgaaggccagcag
aaagcggttatggaaaagattgtctctgcagttgaaggagaagattcctctctataccag
gctactgccgaagaacttctaaacaagtacgaagcaaaagacatattggcttctgttatt
aaattgatgacaaaagagccagatcagactccaatcaagcttacagaagaagcacctgct
ttctctaaacgcggaagaggcggagaccgcggcggaagccgaagcggaagaggccagact
tctacaggcggaggacggcgtgaatatggccaaaaacgcggcagaaaacctgctggcaga
ggcggccaaggcgccagcaaaagagaaaaacaatattaa
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