Paraperibacillus esterisolvens: V1501_18280
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Entry
V1501_18280 CDS
T11219
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pest Paraperibacillus esterisolvens
Pathway
pest03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pest00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V1501_18280 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pest03019
]
V1501_18280 (rnr)
03016 Transfer RNA biogenesis [BR:
pest03016
]
V1501_18280 (rnr)
Enzymes [BR:
pest01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
V1501_18280 (rnr)
Messenger RNA biogenesis [BR:
pest03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
V1501_18280 (rnr)
Transfer RNA biogenesis [BR:
pest03016
]
Prokaryotic type
tRNA degradation factors
V1501_18280 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
OB_RNR_1st
S1_RRP5
DUF5076
MarR_2
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
XNY71920
LinkDB
All DBs
Position
complement(3619250..3621613)
Genome browser
AA seq
787 aa
AA seq
DB search
MEDNIQQHVDRLLEYMKESSYKPLTVQELEEAFGIHDSSEFKEFVKALVHMEERGLVVRT
RNNRYGLPEKMNLIRGKLTGHAKGFAFVIPDEPGMDDIFIPPSETKNAMHGDIVLARVSE
EKSGARREGTIEKIIERGILHIVGTYTESKNFGFVIADDKKIANDIFIPKGSSMGAVEGH
KVVVKLIAYPTGGLSAEGEVIEILGHKNDPGVDILSVIHKHGIIVPFPEEVIDQANNVPD
TIDESEIKDRRDLRDQMIVTIDGADAKDLDDAVTVTRLENGNYKLGVHIADVSHYVQEGS
PIDVEAADRGTSVYLVDRVIPMIPHRLSNGICSLNPKVNRFTLSCEMEIDAEGQVVSHEI
FQSVIKTTERMTYHDVNRILVDKDEELRTRYEPLVPMFEDMETLAQILREKRMKRGAIDF
DFKEAKVLVDEEGQPTEVVLRERSVAEKLIEEFMLAANETVAEHFHWMDVPFIYRIHEDP
KEDKLRRFFEFITNFGYIVKGSANSIHPRALQEIVEAVEGKPEEMVISTVMLRSMQQAKY
DPESLGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYLIEGKVDPETRAKWGALLPDIAK
HTSERERRAVDAERETDDLKKAEYMLDKIGEEFDGIISSVTSFGMFIELSNTIEGLVHVS
AMTDDYYRFDERQLAMIGERTAKVFRIGDEITIRVSNVNKDERAIDFEIVGMKNNRQSET
GERKVFKTGGRRRDDKGGPGGEKGRGRRNGSGDGSTGSAAGADKKPRRKKKKFFENAPAA
KRKKKKK
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
gtggaagataatatccagcagcatgtagaccgcctgcttgaatacatgaaggaaagcagc
tataaaccattgacagtccaggagttggaagaggcattcggcattcacgattcctctgaa
ttcaaggaatttgtcaaggcactggttcacatggaagaaagaggacttgttgtacgaaca
cggaataacagatacgggctgccggaaaagatgaacctgatacggggaaaactgaccggc
catgccaaggggttcgcatttgtcatacctgatgagcctggtatggatgatatatttatc
cctccaagcgaaacgaagaacgccatgcatggcgatatagtccttgcacgtgtatccgaa
gagaaatctggtgcacggcgcgaaggaaccatcgagaaaattatcgagcgcggcatcctc
catattgtgggtacatatactgagagcaagaattttggttttgtgatcgcggatgataaa
aaaatcgcaaacgacatctttatcccgaaaggttcctccatgggggcagtggaagggcat
aaggttgtcgtaaagctgattgcctatccgaccggcggcttgagcgctgagggtgaagtg
attgagatcctcgggcataaaaatgatccgggagtcgatattctttctgttatccataag
catggcattatcgtgccgtttccggaggaagtcattgatcaggccaacaatgttcctgat
acgatagatgaaagtgaaattaaggaccgccgcgacctgagagatcagatgatcgtcacc
attgacggagcagacgcgaaggacctggatgatgctgtaacagtcacaaggcttgagaac
ggcaattataagctcggcgtccatatcgcagatgtaagccattatgtgcaggaaggctcc
ccgattgatgtagaggcagcagacagaggtacaagcgtatatctcgtggaccgggttatt
ccgatgattccgcacaggctgtcaaatggaatctgctcgctgaatcccaaggtgaaccgt
tttaccctttcatgtgaaatggaaatagatgcggaaggccaggtagtcagccacgagatc
ttccagagcgtcatcaagacaacagagcgaatgacctaccatgatgtgaaccggattctt
gtagacaaggatgaagagcttcgcacccggtatgagcctcttgtcccgatgttcgaggac
atggagacgcttgcgcagattctgagggaaaaacgcatgaagcgcggtgccatcgacttt
gacttcaaagaagcgaaggtgctggtggatgaagaaggacagccgacagaagttgtcctc
cgcgagcgctcggtggcggaaaagctgattgaggaattcatgcttgcggccaatgaaaca
gttgccgagcattttcactggatggacgtcccgttcatttacaggatccacgaagacccg
aaagaagataagcttcgcaggttctttgaattcataacgaatttcggctacatcgtaaaa
ggaagcgccaattccattcatccgcgcgccctccaggaaattgttgaggcagtagaagga
aagccggaggaaatggttatctcaacagtgatgctgcgttccatgcagcaggcgaagtat
gacccagaaagcctggggcatttcgggctgtccactgagttttatactcacttcacatca
ccgattcgccgttatccagatttgatcgtccaccgtctgatcaggacatatctgattgaa
ggaaaagtggatccggaaacccgcgcgaaatggggcgcactgcttcctgatatcgccaag
cacacatctgaacgggaacgccgtgctgtggatgcagagcgtgaaacagacgacctgaag
aaggctgaatacatgctcgataaaatcggggaagaatttgacggcatcatcagctctgta
accagctttggcatgttcatcgagctttccaataccattgaggggcttgtacatgtcagt
gcgatgacggatgattattaccgctttgacgaacgccagctggctatgatcggcgagcgt
acagccaaggtattccgcattggcgatgaaatcaccatccgggtttcgaacgtcaataag
gatgaaagagccatcgactttgaaattgtcggcatgaagaataaccgccaaagcgaaacg
ggcgagagaaaagtattcaagacaggcggacgccgccgtgatgataaaggcggcccaggc
ggggaaaaaggccgcggcagaagaaacggaagcggggacggaagcactggttccgcagcc
ggagccgacaagaagccgcgccggaagaagaagaaattctttgaaaacgcgccggccgca
aaaaggaaaaagaaaaagaaataa
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