Petrimonas sp. IBARAKI: PEIBARAKI_4027
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Entry
PEIBARAKI_4027 CDS
T05132
Name
(GenBank) ATP-dependent RNA helicase, DEAD/DEAH boxfamily
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pet
Petrimonas sp. IBARAKI
Pathway
pet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PEIBARAKI_4027
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pet03019
]
PEIBARAKI_4027
03009 Ribosome biogenesis [BR:
pet03009
]
PEIBARAKI_4027
Enzymes [BR:
pet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PEIBARAKI_4027
Messenger RNA biogenesis [BR:
pet03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PEIBARAKI_4027
Ribosome biogenesis [BR:
pet03009
]
Prokaryotic type
rRNA helicases
PEIBARAKI_4027
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
BBD44034
UniProt:
A0A3G9E9L3
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All DBs
Position
complement(38216..39940)
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AA seq
574 aa
AA seq
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MRTFEELGIAPAIWRAIQEMGFEQPMPVQEEVIPQLLANTRDIIALAQTGTGKTAAFGLP
IIQKTAIELHAPQTLILCPTRELCLQIAGDLTDFSKYIDDIKILPVYGGSSIESQIKTLK
RGVHVIVATPGRLIDLINRKTVSLANVHTVVLDEADEMLHMGFTESIDEILSHVPDNRSM
LLFSATMPQEIAKITRKYMSNPMEITIGRKNEGALNVKHTYFMVHAKDKYLALKRIVDYY
PNIYGIVFCRTRKETQEIADKLIQDGYDADSLHGDLSQAQRDYVMNKFRLRNLQLLIATD
VAARGLDVDDITHVINFGLPDDYEVYTHRSGRTGRVGKTGTSISIIHTKEKGKVAQIEKL
INKKFEYRQVPKGDIICEKQLFNFVDKIEKVKVNEEEIARLLPSIFKKLDWLEKEDVIKR
MVSLEFNRLIDYYQAANEIEEPKEHNSKREERGKGKKFDRNEGGPKKAENGYARFFINIG
KMDGANPANLMGFINDYVPGKIRVGRIDLMKNFSFFEVPEENVKQILKSFKGVFVEDRKL
VVELADNNMPENKKYKGDKPKQDFNVSKKGKKRF
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgagaacttttgaagaacttgggattgcacccgcgatttggcgtgccattcaggaaatg
ggttttgaacaacccatgccggtacaggaggaagtgattccgcaactgctggcaaatacc
cgtgacataattgctctggcgcaaaccggaactggaaaaactgctgctttcggtttgcca
atcatccaaaaaacagccatcgaactgcatgcaccgcagacactgatcctttgtcctaca
cgggagctttgtttacagatagccggtgatttaaccgatttttccaaatatattgatgat
ataaaaatccttcctgtctacggcggatcaagcatagaaagccagattaaaacgttaaaa
cgaggcgttcatgttatcgttgccacaccgggtaggttgattgatttgataaaccgcaaa
accgtttcgttggcaaatgtccataccgttgtgctggatgaagctgatgaaatgttacac
atgggatttacggaaagtatagatgaaattttgtctcacgttcccgacaaccgcagcatg
ctgcttttttcagccaccatgccccaggagatagccaaaattacccggaaatatatgtcc
aaccccatggagataaccattggacggaaaaacgaaggtgcgctgaacgtgaaacacacc
tatttcatggttcacgcaaaagacaaataccttgcgttaaaacggatcgtggattactac
cccaacatatacggcattgtcttttgcaggacaagaaaagaaacgcaggaaatagcagat
aagcttattcaggatggctacgatgccgattcgttgcacggtgacctgtcgcaggcacaa
cgtgactatgtcatgaacaagttccgcttacggaacctgcagttgcttattgctaccgac
gttgctgcccgaggactggacgtggacgatatcactcatgtgattaactttgggcttccc
gatgattacgaagtatacacgcaccgtagcggacgtacaggcagggtgggaaaaaccgga
acatccatatccattatccataccaaagaaaaaggaaaagttgctcagatagaaaaactc
atcaataaaaaatttgaatatcgtcaggtacccaaaggagatattatttgcgaaaagcaa
ctgttcaactttgtagataaaattgaaaaggttaaggtaaatgaagaagaaattgcccgt
ttactgccttccatcttcaagaaacttgattggctggaaaaggaggatgtcattaaacgt
atggtctccttggaatttaaccggctgattgactactaccaagccgccaatgaaattgaa
gaacccaaagaacacaactcgaaaagagaggaacgtggaaaaggaaaaaaatttgacaga
aacgaagggggaccgaaaaaggctgaaaatggatatgcccgcttttttatcaatatcgga
aaaatggacggcgccaacccggctaacctgatgggttttatcaacgattatgtgcccggg
aagatcagggtagggcgtatcgatctgatgaagaacttttcgttttttgaagtccccgaa
gaaaatgtcaagcaaattctcaaatcctttaaaggagtcttcgtggaagacagaaaactg
gtggttgaattagcagacaacaatatgccggagaacaagaaatacaaaggtgacaaacca
aaacaggatttcaacgtctccaagaaagggaaaaaacgtttctaa
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