Petrimonas sp. IBARAKI: PEIBARAKI_5440
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Entry
PEIBARAKI_5440 CDS
T05132
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
pet
Petrimonas sp. IBARAKI
Pathway
pet03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PEIBARAKI_5440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pet03400
]
PEIBARAKI_5440
DNA repair and recombination proteins [BR:
pet03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PEIBARAKI_5440
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PEIBARAKI_5440
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
PolyA_pol_RNAbd
AAA_30
AAA_22
AAA_16
SLFN-g3_helicase
ASTN1_2_fn3
Motif
Other DBs
NCBI-ProteinID:
BBD45447
LinkDB
All DBs
Position
1738041..1740065
Genome browser
AA seq
674 aa
AA seq
DB search
MHFQLTSEYRPTGDQPEAIKALIEGLRQKIPYQTLLGVTGSGKTFTIANVIAQLNKPTLV
LSHNKTLAAQLYSEFKGFFPNNAVEYFVSYYDYYQPEAYIPTTDTYIEKDLSINDEIEKL
RLAATSSLLSGRNDVIVVSSVSCLYGIGNPEDFNKTTVDISEGQLLERDHFLRLLVNSLY
SRDETAEFSRGNFRVKGDTVDVFLAYHDYIVRVIFWGDEIESIETVDPLTGVTTERLNSY
RIFPANLFVTTKERIFRAIDEIQIDLGKQVEFFQSIGKPLEAKRLYERVTYDVEMIKEIG
YCSGIENYSRYFDGRLPGTRPFCLLDFFPEDYLTVIDESHVTIPQIRAMYGGDHSRKLNL
VEYGFRLPAAIDNRPLTFEEFEAHTPEIIFVSATPADYELEKSEGIVVDQLIRPTGLLDP
PIDVRPSLNQVDDLMEEIQLRVEKNERVLVTTLTKRMAEELTDYLSQHDIRCNYIHSDVE
TLERVKIMDDLRSGIFDVLIGVNLLREGLDLPEVSLVAVLDADKEGFLRSHRSLTQTAGR
AARNVNGKVIFYADKITDSMQTTIDETNRRREKQIKYNEQHGITPQQIIKARSSVLNKEY
TVTAEARAYVEPDYYSMASEPLPEYATADDLKTKIEQTRKAMLSAAKKLEFLEAARLRDE
LIKLEDELEEKSKC
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgcatttccaacttacatccgaatacaggcctaccggcgatcagccggaagccataaag
gctttgatagagggactcagacagaaaatcccttatcagacactgttgggagttaccggt
tcggggaaaacatttaccattgccaacgtgatagcacaattgaacaaacccacgttggtg
ctgagtcacaacaagacactggcagcacaactgtacagtgagttcaaaggctttttcccg
aataatgcggtggagtatttcgtctcttattacgactattaccagcccgaggcttatatt
ccaactacagacacttacattgagaaagacctgtccattaacgatgaaattgaaaaattg
cgtttggcagccacttcatcgttgctctcgggacgaaacgacgtgattgttgtttcgtcg
gtctcctgcctctacggaatcggaaatccggaggatttcaacaaaacgactgtggatatc
agcgagggacaattgctggaacgggatcatttcttgcggttgcttgtaaacagtttgtat
tcgcgcgatgaaactgccgagtttagccggggaaattttcgcgtgaaaggggatacggta
gatgtttttttggcataccacgattatatcgtacgcgtaatcttctggggcgatgaaata
gaaagtatcgaaacggtcgacccgctcacgggagtgaccaccgagcgcctgaactcctac
cggatttttccggccaacctttttgtaactaccaaagaacggatttttcgcgccatagat
gaaatccaaatcgatctgggaaaacaggtggagtttttccagtctatcggaaaacccctt
gaagccaagcgcctgtacgaacgtgttacgtacgatgtggaaatgatcaaggagattggg
tattgctcgggcattgagaattattcacgctattttgacgggcgtttgcccggaacacgg
cctttctgcctgcttgacttttttcccgaagactacctcaccgttatcgacgaaagccac
gtgaccatccctcaaatccgggcgatgtacggcggtgaccattcgcggaagcttaacctg
gttgaatacggttttcgcctgcctgcagccatagataaccgcccgcttacgtttgaggaa
tttgaagcacatacgcctgaaatcatttttgtcagcgctactcctgccgattatgaattg
gaaaaatcggaagggattgtcgtagaccagctgatccgcccgacgggattactcgacccg
cccattgatgtgcgcccgagtttgaaccaggtagatgatttgatggaggagattcagctg
cgggtagaaaaaaacgaacgtgtcctcgtaaccacactcaccaaacgcatggcggaagag
ctgaccgattacctttcgcagcacgatatacgttgcaactacatccattccgacgtagaa
acactcgaacgcgtgaaaattatggatgatctccgaagcgggatttttgatgtgctcatc
ggggtcaacctgcttcgcgaaggattggatcttcccgaagtttcacttgtcgctgtcttg
gatgccgacaaggagggttttctgcggtcgcatcgttccctgacacaaactgcggggcgt
gccgcccgaaacgttaatgggaaagtcatattctatgccgacaaaataaccgacagcatg
caaacgactatcgatgaaactaaccgccggcgggagaagcagataaaatacaacgaacaa
cacggcattacgccgcaacagataataaaagcccggtcatccgtgctaaacaaggagtac
acggttaccgcagaagctagggcatacgtagagcccgattactattccatggcatcggag
ccgttgcccgaatatgctaccgcagacgatctgaaaacaaaaatcgaacagacccgcaag
gcaatgctgtcagctgccaaaaaactggaattcctggaggcggcaaggctgcgtgatgag
ttgataaaattagaagatgagctggaagagaagtctaaatgttga
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