Petrimonas sp. IBARAKI: PEIBARAKI_6002
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Entry
PEIBARAKI_6002 CDS
T05132
Name
(GenBank) Exonuclease RNase T and DNA polymerase III
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
pet
Petrimonas sp. IBARAKI
Pathway
pet03030
DNA replication
pet03430
Mismatch repair
pet03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PEIBARAKI_6002
03430 Mismatch repair
PEIBARAKI_6002
03440 Homologous recombination
PEIBARAKI_6002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pet03032
]
PEIBARAKI_6002
03400 DNA repair and recombination proteins [BR:
pet03400
]
PEIBARAKI_6002
Enzymes [BR:
pet01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PEIBARAKI_6002
DNA replication proteins [BR:
pet03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PEIBARAKI_6002
DNA repair and recombination proteins [BR:
pet03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PEIBARAKI_6002
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
BRCT
Rv2179c-like
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
BBD46009
UniProt:
A0A3G9EK02
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All DBs
Position
2426529..2427365
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AA seq
278 aa
AA seq
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MDNLTFTAFDTETATSHSASICQIGFVVVREGQITSEKSYLIQPPGNEYEARHSCIHGID
SLRTKDKPLFPEVWENIKDEFISSLLVAHNVSFDINILNSTLAYYNLPRPQCNCDCTYQL
SGLKLKSLAESLGIVMTKHHDALSDAKACAQAYLFLKQGIKPNLTLIREYKNSNPFAGHE
KLTGNILKPDLNVENILNPFYAKKVVFTGILQTMTRDEAAKRVKDLGADIDTGVTKRTDF
VIVGQGAGPSKLKKIEDLNLSGFKIRIIIEDDFLNMIK
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atggacaacttaacattcactgcattcgacaccgaaacagcaactagtcatagtgcgagt
atttgtcagattggatttgttgttgttagagaaggacaaatcacaagcgaaaaatcatat
cttattcagccgccgggcaatgaatatgaagctcgacactcttgtattcatggaattgat
tcattaagaacaaaagataaacctttatttcctgaggtttgggaaaatattaaagatgaa
tttataagttcactacttgtagcacataatgtaagttttgatataaacatattaaattca
actcttgcatattacaatttgccaagaccacaatgtaattgtgattgtacttatcagctt
tctggattaaaattaaagtctctcgctgagtctttaggaattgtaatgacgaagcatcat
gatgctctttcagatgccaaagcttgtgcccaagcctatttgtttcttaagcaagggatt
aaaccaaatctaactttaataagagaatataagaattcaaacccttttgctggacatgag
aaacttacaggaaacattcttaaaccggatttgaatgttgagaatattttaaatccattt
tacgcaaaaaaagtagtatttacagggattctgcaaaccatgacaagagatgaagcggca
aaaagagttaaagatttgggagctgatatcgatactggtgtcactaaacgaacagatttt
gttatcgttggacaaggcgcaggaccttcaaaattgaagaaaattgaagacctaaatttg
tcgggcttcaaaatccgaattattatagaggacgatttcttaaatatgataaaataa
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