Petrimonas sp. IBARAKI: PEIBARAKI_6218
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Entry
PEIBARAKI_6218 CDS
T05132
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pet
Petrimonas sp. IBARAKI
Pathway
pet03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pet00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PEIBARAKI_6218
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pet03021
]
PEIBARAKI_6218
03400 DNA repair and recombination proteins [BR:
pet03400
]
PEIBARAKI_6218
Enzymes [BR:
pet01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PEIBARAKI_6218
Transcription machinery [BR:
pet03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PEIBARAKI_6218
DNA repair and recombination proteins [BR:
pet03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PEIBARAKI_6218
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
BBD46225
LinkDB
All DBs
Position
complement(2722894..2723895)
Genome browser
AA seq
333 aa
AA seq
DB search
MAILAFQKPDKVIMIQENAFSGKFEFRPLEPGYGITIGNALRRILLSSLEGYAITSVKFD
GVEHEFASIPGIIEDVTTIILNLKKIRFKRIVEEFDTEKVSLNVSGTNVFKAGDVGKLLT
GFEVLNPELEICHLEKKAELRLELTINKGRGYVPAEENRAMLPSEDVQTIAIDSIFTPIR
NVKYEIENYRIEQKTDYEKLIIEVTTDGSIQPKDALKEAAKILIQHFALFSDEAKMMVET
TGTENIEEFDEEVLHMRQLLKRKLSDLNLSVRALNCLKAAEVETLGHLVMHNKNDLLKFR
NFGKKSLTELEELLDNLSLSFGMDISKYKLDKD
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atggcaatattagcattccaaaaacccgataaagtaatcatgatccaggagaatgcgttc
tccggaaagttcgaattccgtccgctggagcccggatacggcattaccattggtaacgcg
ttgcgccgtattttgctttcttctctcgaaggatatgcaattacatcggtaaagtttgac
ggtgttgaacatgaatttgcttctattccgggtataattgaagatgtgacgactattatc
ctgaatctgaaaaaaattaggtttaaaaggatagtagaagaatttgatacggaaaaagta
agtctcaatgtatcgggcacgaatgtgtttaaagccggagatgttggcaaattactgact
ggttttgaagttctgaatcctgaacttgaaatctgtcatttagagaagaaagctgaatta
cggctcgaactgaccatcaacaagggacgtggatatgttccagctgaggaaaatcgtgct
atgttgccttctgaagacgtgcaaaccattgctatcgactctattttcacgcctatcaga
aatgtaaaatacgaaatagagaattaccgtatcgagcaaaagaccgactacgaaaaatta
attatcgaagttaccacggatggttccatccaaccgaaagatgcgttaaaggaggctgct
aaaatccttatccagcattttgcgttgttctctgacgaagccaagatgatggtagaaacc
accggtacagagaatatcgaggaattcgacgaagaagtgttgcacatgcgtcaattgctg
aaacgcaaattgtctgacctgaatctttcggttcgtgcgctcaactgcctgaaagcggct
gaagtggaaaccctgggtcatctggtgatgcacaacaaaaacgatttgttgaagttcaga
aacttcggaaaaaaatcgcttactgagctggaggagttacttgataatttaagcctgtcg
ttcggtatggatatctcgaaatataaattagataaagattaa
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