Petrimonas sp. IBARAKI: PEIBARAKI_6408
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Entry
PEIBARAKI_6408 CDS
T05132
Name
(GenBank) DNA-directed RNA polymerase beta chain
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pet
Petrimonas sp. IBARAKI
Pathway
pet03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pet00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PEIBARAKI_6408
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pet03021
]
PEIBARAKI_6408
03400 DNA repair and recombination proteins [BR:
pet03400
]
PEIBARAKI_6408
Enzymes [BR:
pet01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PEIBARAKI_6408
Transcription machinery [BR:
pet03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PEIBARAKI_6408
DNA repair and recombination proteins [BR:
pet03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PEIBARAKI_6408
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Pept_S41_N_bact
Motif
Other DBs
NCBI-ProteinID:
BBD46415
LinkDB
All DBs
Position
2959486..2963298
Genome browser
AA seq
1270 aa
AA seq
DB search
MSSNNTNQRINFASTKNPLDFPDFLEIQLKSFQDFLQLDAPPESRKNEGLYKVFTENFPI
ADTRNNFVLEFLDYFVDPPRYTIEECIDRGLTYSVPLKAKLYLYCTDPDHEDFAPVIQDV
YLGTIPYMTDKGTFIINGAERVIVSQLHRSPGVFFGQSVHANGTLLYSARIIPFKGSWIE
FATDINNVMYAYIDRKKKLPVTTLLRSIGFESDKDILEIFDLAEEVKVSKANLKKVIGRK
LAARVLKSWMEDFVDEDTGEVTSIERNEVIIERETILDQGHIDDILEADISSILLHKETS
NSSDYSIIYNTLQKDPSNTEIDAIRHIYRQLRSAEPADDASAREVINNLFFSEKRYDLGD
VGRYRMNKKLGLDIDESIRVLTKEDIIEIIKYLIELVNSKAVVDDIDHLSNRRVRTVGEQ
LYSQFGVGLNRMARIIRERMNVRDNEVFTPIDLINAKTISSVINTFFGTHALSQFMDQTN
PLAEITNKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVYA
KINDLGFIETPYRKVEDGVVNTRNEEVVYLSAEEEEEKVVAQGNAPLNESGEFILPRVKS
RLEADYPLATPEEVDLMDVSPMQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLIKNE
APIVATGIEGRLVKDSRTQLMAEGNGEIIYVDATTIKIKYDRTEEEEFASFEDSIKTYDI
PKFRKTNQNTTIDLRPICKLGQKVSKGDILTEGFATENGELALGRNLKVAFMPWKGYNFE
DAIVLNERLVSEDVFTSVHVEEFSLEVRETKRGLEELTSDIPNVSEEATKDLDEHGIIRV
GARVKPGDILIGKITPKGESDPSPEEKLLRAIFGDKAGDVKDASLKASPSLKGVVINTNL
FSKAAKKGKSKLSNKALLPKLDEEYENKMEELRKLLIDKLLHITEGKTSAGVKDYTNMDI
VPKGAKFTLKVLSDIDYQSVQLSKWTTDAHKNQLIRTTVINYLRKFKELDAELKRKRFDL
TIGDELPSGIMQIAKVYVAKKRKIQVGDKMAGRHGNKGIVSKIVRSEDMPFLADGTPVDI
VLNPLGVPSRMNLGQIFETVLGWAGKELGVKFATPIFDGASLDDLNEWTDKAGIPRYGKT
YLYDGGTGERFDQPATVGIIYMLKLGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRF
GEMEVWALEAFGASHILQEILTVKSDDVVGRSKAYESIVKGEAMPQAGIPESLNVLLHEL
KGLGLSVELD
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcaaataacaccaaccaacgaatcaattttgcgtctacaaaaaacccactcgat
tttcctgattttctggaaattcaactcaagtcgtttcaggattttttgcaacttgacgct
ccccccgaaagcagaaaaaatgaaggattgtataaggttttcacggaaaattttcccatt
gcggacacccgtaataactttgtccttgaatttttagattattttgtcgatccgccacgc
tacactattgaagagtgcatagacagagggcttacctacagtgttccgctgaaggccaaa
ctttatttatattgtaccgatcccgatcacgaagattttgcacccgttattcaggacgtt
tacctgggaaccattccgtacatgaccgataaaggcacctttatcatcaacggagcagaa
cgggttatcgtatctcaattacaccgttcgcccggtgtattcttcggtcaaagcgtacat
gccaacggcacgctcctctactctgcccggattataccgttcaaaggttcatggattgaa
tttgctacggacatcaacaacgtgatgtatgcgtacatcgaccgaaaaaagaaattacct
gtaaccactttgcttcgctccataggttttgaaagcgataaagatatccttgaaatcttc
gaccttgccgaagaggtgaaagtaagcaaagccaacctgaaaaaggttattggtagaaaa
ctagccgcccgcgtgctgaaatcgtggatggaagacttcgtggacgaagacaccggcgaa
gtaacttccatagaaagaaacgaagtaatcattgagcgggaaactattctcgaccagggg
catattgatgacatcctggaagcggatatctcctccatcctgttgcacaaggagacttcc
aactcgtccgattactccatcatatacaacaccctgcagaaagaccccagcaatacggaa
attgacgccatccggcatatttaccgtcagcttcgcagtgcagaaccggcagacgatgcc
agtgcacgcgaagtgatcaacaaccttttcttctccgagaaacggtacgatttgggagac
gtggggcgctacagaatgaacaaaaaactgggtctcgatatcgatgagagcattcgtgta
ttaacgaaagaagacattattgagattattaaatacctcatcgaactcgtgaactccaaa
gcggtggtggacgatatagatcacctgagcaacaggcgtgtccgtaccgttggggaacaa
ctatactctcagttcggtgttggcttgaaccgcatggcgcgcattatccgtgaaaggatg
aacgtgcgtgacaatgaagtgttcacccccattgacctgatcaatgcaaaaaccatctct
tccgttatcaatacgttcttcggcacccatgcgctgtcgcagttcatggatcagaccaat
ccgttggcagagatcacgaacaaacgccgtctttctgcgttaggccccggcggcctctca
cgtgaacgtgccggttttgaagtgcgtgacgtgcattatacgcactatggacgtctgtgc
ccgattgaaacacccgaggggcccaatatcggccttatttcttcgctctgcgtttacgcc
aaaatcaacgacctgggctttatcgaaacgccctatcgcaaagttgaagacggtgtggtt
aatacccggaacgaagaagtggtttatctttcagcggaagaagaagaagaaaaagtggtt
gcacaaggaaacgctccgttaaacgagagcggcgagtttattttaccgcgtgtgaaatcg
aggctcgaagctgactatccgcttgccacacccgaggaagtggacctgatggacgtttcg
cccatgcagatcgcttctattgccgcatcacttataccgttccttgagcacgacgatgcc
aaccgcgcacttatggggtcgaacatgatgcgtcaggcggttccgcttattaaaaatgaa
gctcctattgtcgccactggtatagaaggtcggctggttaaagattcccgtacacaattg
atggccgaaggaaacggagagatcatttacgtggatgccaccaccatcaagataaaatac
gacaggacggaggaggaagagtttgccagttttgaggattctatcaagacttacgacatt
cctaaattccgtaaaaccaaccagaatacaaccatcgacctgcgtccgatttgcaagttg
ggacaaaaagtttccaaaggcgatatcctgaccgaaggttttgctacggagaacggagag
cttgctttgggccggaacctgaaagtggcgttcatgccctggaaaggatacaactttgaa
gacgctattgttttgaacgaaaggctggtcagcgaagatgtatttacttcggttcacgtg
gaagagttctctctcgaagtgcgtgaaaccaaacgtgggttagaggaacttacttccgac
atacccaacgtaagtgaagaggccaccaaggatctcgatgagcacggtattatccgtgtg
ggtgcacgcgttaagccaggcgatattctgattggaaaaattactccgaaaggggaatcc
gacccatcacccgaagaaaaactgcttcgcgccatctttggcgacaaggcaggcgacgtg
aaagatgcttctctaaaagcttcaccatcacttaagggtgtggttatcaatacgaacctg
ttctcgaaagccgctaagaaaggcaaaagcaagttgtcgaacaaagcgcttcttcccaaa
ctcgacgaagagtatgagaacaagatggaagaactgagaaagttgcttatcgataaactc
ctgcacattaccgaaggcaagacgtctgccggcgtgaaggattacaccaatatggatatt
gttcccaaaggagctaaattcaccctgaaggttctttcggatatcgattaccagtcggtt
caattgagcaagtggacaaccgacgctcacaaaaaccaattgatccgcacaacggtcatc
aattacctgcgcaagttcaaggaactggatgcagagcttaagcgcaagcgtttcgacctg
actataggcgacgagcttccctcgggaattatgcagattgccaaagtatatgtggccaaa
aaacgcaaaatccaggtgggtgacaaaatggccggacgccacggtaacaaaggtatcgtg
tcgaaaattgtccgttcggaagacatgcctttccttgccgacggaactccggttgacatt
gtgctgaacccactgggcgtaccttcacgtatgaacctggggcagattttcgagacggtg
ctcggatgggctggaaaagaactcggcgtaaaatttgcaacacccattttcgacggcgca
tcgttagatgacctgaatgaatggacggacaaagccggtattccccgctacgggaagacc
tacctgtacgacggaggaacaggcgaacgttttgaccaacctgctaccgtgggcatcatt
tatatgttgaaactcggacatatggtggaagacaagatgcacgcccggtccatcggtcca
tactcgctcatcacgcagcaacccctcggcgggaaagcccagttcgggggacagcgtttt
ggagaaatggaggtttgggcgctcgaggctttcggcgcgtcgcacatcctgcaggaaatc
cttaccgttaaatccgatgacgttgtcggacgttcaaaagcttacgaatccatcgtgaag
ggagaagcaatgccgcaagccggcatccccgaatcgttgaacgtactgcttcacgagctt
aaaggcttgggattgagcgtagaacttgattaa
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integrated database retrieval system
