Petrimonas sp. IBARAKI: PEIBARAKI_6409
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Entry
PEIBARAKI_6409 CDS
T05132
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pet
Petrimonas sp. IBARAKI
Pathway
pet03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pet00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PEIBARAKI_6409
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pet03021
]
PEIBARAKI_6409
03400 DNA repair and recombination proteins [BR:
pet03400
]
PEIBARAKI_6409
Enzymes [BR:
pet01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PEIBARAKI_6409
Transcription machinery [BR:
pet03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PEIBARAKI_6409
DNA repair and recombination proteins [BR:
pet03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PEIBARAKI_6409
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
BBD46416
UniProt:
A0A3G9E3H0
LinkDB
All DBs
Position
2963324..2967610
Genome browser
AA seq
1428 aa
AA seq
DB search
MAFRKENKIKSSFSKITISLASPEQILESSFGEVLKPETINYRTYKPERDGLFCERIFGP
VKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERTGHIHLVVPVAHIWYFRSLPNKI
GYLLGIPTKKLDSIIYYERYVVIQPGVLEDKVAEKDLLSEEEYLNLLDTLPKDNHLLEDT
DPNKFIAKMGAEAILDMLERINLDKQANQLRHRASTDTSQQRKNEALKQLQVVEAFRGSK
SVNKPDWMIMKVIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIDIKAPD
VILRNEKRMLQEAVDSLFDNSRKSSAIKTDSNRPLKSLSDSLKGKQGRFRQNLLGKRVDY
SARSVIVVGPELKMHECGIPKDMAAELYKPFIIRKLIERGIVKTVKSAKKIVDRKEPVVY
DILEYVMKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLSCTAFNADFDGDQMAVH
LPLGNEAILEAQVLMLASHNILNPANGAPITVPSQDMVLGLYYITKIRPGAQGEGMTFYG
EEEAIIAYNEGKVDIHALVNVLVDDIDENGNPVRKMHQTTVGRVITNEYIPKEVGYINEL
LSKKSLRDIIGKVIKTCGVARTAQYLDDIKDLGYKMAFKGGLSFNLEDVIIPKEKEDLIQ
QGYNEVEQIMDNYNMGFITYNERYNQIIDTWTHINSKLSNILMKQLAEDDRGFNSVYMML
DSGARGSREQIRQLSGMRGLMAKPQKSGAEGAQIIENPILSNFKEGLSVLEYFISTHGAR
KGLADTALKTADAGYLTRRLVDVSQDVIINEVDCGTLRGLVATDIKNNDEVIASLYERIL
GRVSVHDVPHPTTGEILVNAGEEITEEIAEKIDKSPIERVEIRSVLTCESRHGVCAKCYG
RNLATGQMVQKGEAVGVIAAQSIGEPGTQLTLRTFHVGGIASNIAAESRIITKYDGILEF
DELRFVETQDAEGKPYKVVVSRLVEMRIIDPNTRIVLLSHNIPYGSKLYFNDNDKVKKGD
LICEWDPFNAVIISEATGKIKFENFLEGITYKVESDEQTGLKEKVIIESRDKTKAPSAHI
VNQDDDVLRTYTLPLGAHIVKGENDEIKVGDVLVKIPRAIGKSGDITGGLPRVTELFEAR
NPSNPAVVSEIDGEVSFGKIKRGNQEISITSKTGEIKKYLVPLSKQILVQENDFVRAGMP
LSDGAITPADILAIMGPTAVQEYIVNEVQDVYRLQGVKINDKHFEVIVRQMMRKVEVVEP
GDTRFLEQQLVDKHEMMEENDRIWGKKVIIDAGDSQIFEPGQIVTVRKLRDENSSLKRRD
LKLVESRDAIPATANQVLQGITRAALQTTSFMSAASFQETTKVLNDAAINGKVDTLDGLK
ENVICGHLIPAGTGLREYDKIIVGSKEDFDKMNANRRSPLYQEVEEEA
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atggcatttagaaaagaaaataaaataaagagtagcttttcaaaaataaccatcagtttg
gcatctcccgaacaaatactggaaagttcattcggcgaagtgttaaaacctgagaccatc
aactaccgcacctacaaaccggagcgcgacggtttattttgcgaacgcattttcggcccc
gtaaaagattacgaatgccattgcggcaaatacaagagaatccgttacaaaggtattgtc
tgcgaccgttgcggagttgaagttactgaaaagaaagtacgccgtgagcgtaccggacac
atccacctggtagttccggtggcacacatctggtatttcaggtcattacccaacaaaata
ggttatctgctgggtattcctaccaaaaaactggattctatcatctattacgaaaggtat
gtggtgatccagccgggcgtacttgaagataaagtagctgaaaaagacttgctgagcgag
gaagaatacctcaacttgttggatacgctccccaaggataaccacctcctggaagatacc
gatcccaacaaattcattgccaagatgggtgcagaagctatcctggacatgttggaacga
atcaacttggataaacaggccaaccaactgcgccaccgcgcaagcaccgacacctctcaa
caacgtaagaacgaagcgttgaaacaacttcaggtagtggaagccttcaggggatccaaa
agcgtcaataagccggactggatgatcatgaaagtgattcctgtgattccgcccgactta
cgcccgttggtcccgctggacggtggacgttttgccacttccgacctcaacgacctgtac
cgccgggtaattatccgcaacaaccgtctgaaaaggctgatcgatattaaagcacccgac
gtgatcctgcgcaacgaaaaacgcatgttgcaggaagccgttgactctttgttcgacaac
tcccgcaaatcaagcgccattaaaaccgactcgaaccgtccgctgaaatcgctttcagac
agtctgaaagggaaacagggacgcttccgtcagaacctgctcggtaaacgtgtggactat
tccgcccgttcggttattgttgtcggacccgagcttaagatgcacgagtgcgggataccc
aaagacatggccgcagaactctacaagccatttatcatccgcaagctcattgagcgcggt
attgtaaaaacggtaaaatcagcaaagaaaatcgttgacaggaaagaacctgtggtttac
gatatcttggagtacgtgatgaaaggacaccctgtccttctgaaccgggcccccaccctt
caccgtttgggtattcaggccttccagcctaaactcatcgaagggaaagccattcagctt
cacccgctatcatgtacggcattcaacgccgacttcgacggtgaccagatggccgttcac
ttgccgcttggcaatgaagctatcctggaagcacaggtactgatgttggcttcgcacaac
atccttaaccccgccaacggcgctcccatcaccgttccctcacaggacatggtattggga
ttgtattacatcacaaagatacgtccgggagcacagggcgaaggcatgactttctacggt
gaagaagaagccataatcgcatataacgaaggaaaagtggatattcacgcactggtaaac
gttttggttgatgatatcgacgaaaacgggaaccccgtacgcaaaatgcaccaaaccacc
gttggacgtgtgattaccaacgagtatatcccaaaagaagtaggatacatcaatgaattg
ctctcgaaaaaatcgctccgcgacattatcggaaaggtcatcaagacttgcggagtggcg
cgtaccgcccaatacctggacgacatcaaggacttggggtacaaaatggcgttcaagggc
ggattgtctttcaatctcgaggatgtgattatcccgaaagagaaggaagaccttatccaa
cagggttacaacgaggtagaacagatcatggacaactacaacatggggttcatcacctac
aacgagcgctacaatcagatcatcgatacatggacgcacatcaactccaagttatcgaat
atcctcatgaagcagcttgccgaagacgacagaggattcaactccgtgtacatgatgctc
gattcgggcgctcgtggttcacgcgagcaaatccgacagctttccggcatgcgtggtttg
atggccaaaccgcaaaaaagcggtgccgaaggggctcaaatcatcgaaaatcccattctt
tcaaacttcaaggagggactttcggtattggagtacttcatctccactcacggtgcacga
aagggtcttgccgataccgcactgaagacggccgacgccggttatctgacccgccgtttg
gtggacgtttcccaagacgtcatcatcaacgaagtggactgcggcacccttcgcggatta
gttgccacggacatcaagaataacgacgaggtaattgcttcgctttacgaacgtatccta
ggacgagtttccgtgcacgacgttcctcatcccaccaccggagaaatcctggtgaacgcc
ggagaagaaattacggaagagatcgctgaaaaaatagacaaatcacccatcgaacgcgtt
gaaatccgttcggtacttacctgcgaatcccgccacggtgtttgtgcaaaatgctatgga
agaaacctggctaccggacaaatggtgcaaaaaggagaagctgtaggtgttattgctgcg
caatccatcggggaaccgggtacacagcttacgctacgtacgtttcacgtgggaggtatc
gcttccaacattgccgccgaaagcaggatcatcaccaagtacgacggtatcttggaattc
gacgagcttcgcttcgtagaaacccaagacgctgaaggcaaaccctacaaggtggtagtg
agccgtttggtggaaatgcggattattgatcccaatacccggattgtcctgctgtctcac
aacataccctacggctccaagttgtacttcaacgataacgacaaagtgaagaaaggcgac
ctgatatgcgaatgggaccccttcaacgcagtaattatctctgaagcaaccggtaagatc
aagtttgaaaatttcctggaaggtattacctacaaagtagaatcggacgaacaaaccgga
ttgaaagagaaagtcattatcgaatcgcgcgacaagacaaaagctccatcggcccatatc
gtgaatcaggacgatgacgtacttcgtacgtacacattgccgctcggcgctcacatcgtg
aaaggtgaaaacgacgaaatcaaagtgggcgacgtactggtaaaaattccccgcgcaatt
ggaaaatcgggtgacattacgggaggtcttcctcgcgttaccgaattgttcgaagcgcgt
aacccctccaatccagctgtcgtttccgaaattgacggtgaagtatcgttcggtaagatc
aaacgcggtaatcaggagatttccatcacgtctaaaacgggagaaatcaagaaatacctc
gttccgctgtcaaaacagatacttgtacaggagaacgactttgtacgtgccggcatgccg
ttatccgacggtgccatcactccggcagacattttggcgatcatgggtcctactgcagtt
caggagtatatcgtgaacgaggtacaggatgtataccgcttgcagggagtgaagatcaac
gacaagcactttgaagtaattgtccgtcagatgatgcgtaaagtagaagtggttgagccg
ggtgatacccgtttcctggagcagcaattggtagacaagcacgagatgatggaagagaac
gaccgcatctggggtaaaaaagtgatcatcgatgcgggagattcccaaatcttcgaaccg
ggacaaattgttaccgttcgcaagctgcgcgatgagaacagttcgttgaaacgccgcgac
ctgaaactggttgaaagccgcgatgcaattccagcaaccgccaatcaggtgttgcagggt
atcacgcgtgccgcattgcaaaccaccagcttcatgtcagccgcttcgttccaggaaacc
accaaggtactgaacgatgcagccattaatggaaaagtagatacactggacgggttgaaa
gagaacgttatctgcggtcacttgattccggccggaaccggcttgagggaatacgataaa
ataattgtaggctcaaaagaagatttcgataagatgaatgctaacaggcgttcgcccttg
tatcaggaagtagaagaagaggcataa
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integrated database retrieval system
