Petrimonas sp. IBARAKI: PEIBARAKI_6428
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Entry
PEIBARAKI_6428 CDS
T05132
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pet
Petrimonas sp. IBARAKI
Pathway
pet03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PEIBARAKI_6428
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pet03400
]
PEIBARAKI_6428
Enzymes [BR:
pet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PEIBARAKI_6428
DNA repair and recombination proteins [BR:
pet03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PEIBARAKI_6428
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
BBD46435
UniProt:
A0A3G9EHT8
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All DBs
Position
2998096..3001422
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AA seq
1108 aa
AA seq
DB search
MVSDISQLLRILEVHPNVAAANKLLKEVKTLLVKGLHGSSRALFSATLYNKQPRTFLFIL
NDLETAGYFYHDVTQILGTKDILFFPSAYKRAAKYGQMDPANEILRTEVLSRLQNNDSSL
FIVSYPDALAEKTVSQATLQQNTLRLSVGEQVDSGFVSEVLDSYGFTAVDYVYEPGQYAT
RGSILDVFSFSNELPYRIDFFGDEVETIRSFEVESQLSVEKFVEIRIVPEFGKSKHKNAS
LFDSVPRETIIAIEDIRWIESRVESICNDELSIDISNEELVKADLLTKEEFLSSIEPFTH
LRFDTKLTDTPDAILQFQTTPQPLFQKNFDLISDSLNQFLQNNYTLYILSDSEKQHQRLN
TIFHDRGDDIPFTPVNKTLHEGFSDESLKICCFTDHQIFNRFHKYNLKSEKARSGKIALT
LKELNQLQQGDFVVHLDHGIGKFAGLVRLRIGETVQEVIKLTYLNNDSVFVSIHSLHKIS
KYKGKEGESPQLNKLGSGAWERTKERTKTKIKDIARDLIKLYAQRQNEKGFSYSKDTYLQ
TELEASFMYEDTPDQLKATQEIKLDMESDHPMDRLVCGDVGFGKTEVAVRAAFKAATDGK
QTAVLVPTTVLATQHYKTFSGRLSDLPVKVDYLSRARSAKEQKQILSELKEGKIDIIIGT
HRLVGKDIQFNDLGLLIIDEEQKFGVSTKEKLKQLKSNIDTLTMTATPIPRTLQFSLMGS
RDFSTINTPPPNRYPVQTEVHTFDVEVMKEAINYEVSRNGQVFIVNNRIQNIYEMEALLR
REVKDIRIAVAHGQMDPKKLEAIIADFLNHEYDVLLATTIIESGIDMPNVNTIIVINAQN
FGLSDLHQLRGRVGRSNRKAFCYLMAPPLYTLSTDSRRRLQAIENFSELGSGIHIAMQDL
DIRGAGNLLGAEQSGFIADLGYETYQKILAEAVQELRKEEFTELYREQQELKAEREEDFV
DDVTVESDLELMFPVAYIPNDAERVAMYRELDNMESETQIMDFTQRLEDRFGKIPAQGKE
LIRIVRLRRLAKSLGIEKIFLKTGRMTLFLISDAESPYYRSTAFDKLLNFIQTHPRDCQL
REAGKKRSVIIRNVKTVEAAIALIQSIH
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atggtatcagacatctctcaattgctccggatccttgaggttcaccccaacgtagcggcc
gcaaacaaattgctgaaagaggtaaaaacacttttagtgaaaggtttgcatggttcttcg
cgtgcacttttctcggcaacgctttataacaaacaaccgcggacctttctttttatcctc
aatgacctggaaacggcaggatatttttatcacgacgttacacagatcctgggaacgaaa
gacatccttttctttccttcggcttacaaacgtgctgccaagtacggacagatggatccg
gcaaacgaaattctccgcaccgaagtgttgagtcgtttacaaaacaacgactcttcgttg
ttcatcgtatcttaccccgatgcgctggcagaaaaaacggtttctcaggcaacacttcag
caaaacaccctgaggttgtcggtgggtgagcaggtggattccggttttgtatcggaagta
ctggactcttacggtttcaccgctgtggattacgtttacgaacccggacagtatgccact
cgcggaagtatattggacgtcttttccttttcgaacgaattgccttaccgtatcgatttc
tttggagacgaggtggaaaccattcgcagctttgaagttgaaagccaactttctgtagag
aagttcgtcgaaatccgtatcgtccctgaattcggtaaaagtaagcacaaaaacgcatcg
ctttttgactctgttccccgggagacgattatcgcgattgaagatatccgctggatagaa
agccgcgttgaaagtatctgcaacgatgagctgagcattgacatcagtaacgaggaactg
gttaaagccgacctgctcacgaaagaagagttcctgtcatctattgaaccgttcacacac
ctgcggttcgatacgaaactgacggacaccccagatgccatcttgcagtttcaaacaact
ccgcaaccgttgtttcaaaagaattttgatttgatttcggactcgctcaaccagttcctg
caaaacaactataccctttacatcctcagcgacagtgaaaaacagcaccagcgtctgaac
accatcttccacgacaggggcgacgatattccgttcacgcctgtaaacaaaacattgcac
gaagggttttcggacgaatcgctgaaaatctgctgctttacggatcatcagattttcaac
cggttccacaaatacaacctgaaatccgagaaggcccgctccggaaagattgcactcaca
ttaaaggagcttaaccagcttcaacaaggcgactttgtggttcacctggatcacggaatc
ggaaaatttgcgggactggtccgccttcgtatcggagaaacggtgcaggaggtgatcaag
ctaacctaccttaacaacgattcggtattcgtttccatccattcccttcataagatatcc
aaatacaaaggcaaagaaggagagtctccgcaactcaacaaattaggctccggtgcgtgg
gaaaggactaaggaaagaactaaaacaaaaataaaggatatcgcccgcgaccttataaag
ttatacgcccagcgacagaacgaaaagggattctcctattcaaaagacacctacctgcaa
actgaactggaagcttcgttcatgtatgaagatacgcccgatcagctaaaagccacgcaa
gaaatcaagctggatatggaaagtgaccatccgatggacaggttggtatgcggcgacgtg
ggcttcggcaagacggaagtagccgtacgtgcggctttcaaagcggccaccgatggcaaa
caaacggccgttttggtaccgaccaccgtgctggccacccagcattacaaaacgttcagc
ggaagattgtccgatcttcccgtaaaagtggattacctgagccgcgcccgctcggcgaaa
gaacaaaaacaaatcctctccgagttgaaagaaggcaagatagacatcatcatcggcact
caccggttggtagggaaagacattcagttcaacgacctgggcctgttgattatagatgaa
gaacaaaagttcggcgtatccaccaaagagaaactgaaacagctgaaaagcaatatcgac
acgctcacgatgaccgctacccctattcccagaacgttgcagttttcgctaatggggtct
cgcgatttttccaccataaacacgcctccccccaaccgttatcctgtacaaacggaggtt
cacacgttcgacgtggaggtgatgaaagaggccatcaactacgaggtgagccggaacggg
caggtttttatcgtcaacaaccgcatacagaacatttacgaaatggaagcgctgctcagg
cgcgaggtcaaagacatccgtattgcggtagctcacggacagatggatccgaaaaaactg
gaagccattattgccgattttctgaatcacgagtacgatgtgctgctggcaaccaccatt
atcgaatcgggaattgatatgcccaacgtgaacactattatcgttatcaacgctcaaaac
tttgggctgagcgacctccaccaacttcgcggacgcgtgggaaggagtaaccgcaaagcg
ttctgttacctgatggctccaccgctctacacactcagcaccgattcccggcgaaggtta
caggctattgagaatttctccgagctgggcagcggcattcacatcgcgatgcaggacctg
gatatccggggtgccggtaacctgttgggtgcagaacaaagcggatttattgccgacctg
ggctacgagacgtaccagaagatcctggcagaagccgtacaggaattgcgcaaggaagag
tttaccgaactctatcgcgaacaacaggaactgaaggccgaaagggaagaggattttgtc
gacgacgtgaccgtagagagtgacctggagctgatgtttccggtagcctatatccccaac
gatgccgaacgggtagccatgtaccgcgagttggacaacatggaatccgagacacaaatc
atggattttacccaacggctggaagaccgttttggtaaaatccccgcacaagggaaagag
cttatccgtatcgtgcggcttcgccggcttgctaaatcactaggtatcgaaaagattttc
ctgaagaccggccgaatgaccctcttccttatctccgatgccgaatcgccttattaccgc
tcaacggctttcgacaaactgctaaacttcatccagactcatccgcgggactgccagcta
cgggaagccggcaaaaaacgatcggtaatcatccggaatgtaaaaaccgttgaggcagcg
attgcgctaatacaatccatccactga
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