Petroclostridium sp. X23: QKW49_06250
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Entry
QKW49_06250 CDS
T09049
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
petr
Petroclostridium sp. X23
Brite
KEGG Orthology (KO) [BR:
petr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
petr03016
]
QKW49_06250
Enzymes [BR:
petr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
QKW49_06250
Transfer RNA biogenesis [BR:
petr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
QKW49_06250
Prokaryotic type
tRNA splicing ligases
QKW49_06250
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RtcB
SspH
Motif
Other DBs
NCBI-ProteinID:
WHH60334
LinkDB
All DBs
Position
complement(1271232..1272422)
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AA seq
396 aa
AA seq
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MIEVKGKYNTAKVYIDHVEEQTVSQIIELCNQEFVKDSTIRIMPDTHAGAGCTIGTTMTI
SDKIVPNLVGVDIGCGMEAVRLKVRKLDLGALDSVIRKNVPSGFDIRSKIHKYEKKAGLE
DLRCLKHVNFRRAQLSVGTLGGGNHFIEVDVDQEGKYWLVVHSGSRNLGKQVAEYYQKTA
FNSLNKKSKEKQKLIEDLKEQGRKNEIQDELKKLNYMKVPKQLAYVEGDLFDDYLHDMEI
VQQYAVLNRLAIVDEILGHMKVDETERFTTIHNYIEVQAKILRKGAIAVYEGQKVLIPMN
MRDGALICIGKGNADWNYSAPHGAGRLMSRGAAKERISMEEYKKSMEGIYTTCVDRSTVD
EAPMAYKPMEEIINNINDTVEILDIIKPVYNFKASE
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgatagaagtaaaagggaaatataatactgcaaaagtatacatagatcatgtagaagaa
cagactgtctcacaaatcatagagctatgcaatcaagaatttgtgaaagacagtacgata
agaatcatgcccgatacgcatgccggagcaggatgcacgattggaacgacaatgaccatt
tcagacaagattgtgcccaatctggtgggggtggatattgggtgtggaatggaagcagta
agattaaaagtccgcaaactggatttgggagcgctggatagtgtgattagaaaaaatgta
ccatcaggtttcgatatacggtctaagattcataagtatgagaaaaaagccggacttgag
gacctaagatgtttaaagcatgttaatttcaggagagcacagctaagtgtaggaaccttg
ggcggagggaatcactttatagaagtggatgtagaccaagagggcaagtactggctggtt
gttcactcagggagcagaaatctgggaaagcaagtggcggaatattatcagaagactgct
ttcaacagcttgaacaaaaaatcaaaagagaagcagaaacttattgaggatttgaaggaa
caaggaagaaaaaatgaaatacaagatgaactaaagaaacttaattatatgaaggtaccc
aaacaattggcttatgtggagggtgatctattcgatgattatcttcatgatatggagatc
gtgcaacagtatgccgttctcaacagactggccattgtagatgagattttgggtcatatg
aaggtagatgagacggaacgttttaccactatccataactatatcgaagttcaggcgaaa
atccttcgcaaaggagccattgctgtttatgaggggcaaaaagtacttattcccatgaac
atgagggatggtgcgctgatctgcataggaaaaggaaacgccgactggaactattcggct
ccccatggagccggaaggctgatgagccgtggcgctgcaaaagaaagaatctccatggaa
gaatacaaaaaatctatggaagggatttacacaacgtgtgtggaccgttccactgtagat
gaggcccctatggcatacaaaccaatggaggaaattataaataatattaacgatactgtt
gaaatactggatattattaagccggtatataactttaaggcttcggagtaa
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