Petroclostridium sp. X23: QKW49_12325
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Entry
QKW49_12325 CDS
T09049
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
petr
Petroclostridium sp. X23
Pathway
petr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
petr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QKW49_12325 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
petr03021
]
QKW49_12325 (rho)
03019 Messenger RNA biogenesis [BR:
petr03019
]
QKW49_12325 (rho)
Transcription machinery [BR:
petr03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
QKW49_12325 (rho)
Messenger RNA biogenesis [BR:
petr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
QKW49_12325 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_22
NACHT
AAA
Mor
AAA_14
S1CSD-TOTE-2
LAGLIDADG_1
Motif
Other DBs
NCBI-ProteinID:
WHH61430
LinkDB
All DBs
Position
complement(2599299..2600963)
Genome browser
AA seq
554 aa
AA seq
DB search
MDKDIDLKKKTLEDLRYIAKMMGLKGISRAKKNELVQLILENAEKSEGFQQQQLDTSPVE
DEKKIDIEQEPIEKKAIRKGRKKKADSIPETPSVEDKETEDTKQEPENKVRTKPKVIVES
KAEKDSEQETEKEKPEIQPKVQKKDLTDDENEKQEVDDNAKPEEETKVQKRPNNYPAAFE
KIESDDPVGGVLEVLPDGYGFLRGENYLSGAKDIYVSPSQIRRFNLKTGDKIVGKGRIPK
EGEKFQALLYVQQVNGDHPEVAARRQPFETLTPIYPEKRITLETGPRELAMRLIDLIAPI
GKGQRGMIVAPPKAGKTILLKKIANSISINYPDTELIVLLIDERPEEVTDMQRSIKGEVI
YSTFDEVPEHHIKVAEMVLERAQRLVEHQKDVVILLDSITRLARAYNLTIPPTGRTLSGG
LDPGALHKPKRFFGSARNIEFGGSLTILATALIETGSRMDDVIFEEFKGTGNMELHLDRR
LSEKRIFPAIDINKSGTRKEELLLSQKELETIWAIRKAMSNQGTAEVTETLINRLMSTKS
NDDFVNNIVNTFDR
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atggataaagatattgatctaaaaaagaaaaccctggaagatttgagatatattgcaaag
atgatgggattaaaaggaatttccagggccaaaaaaaacgaattagttcagcttatatta
gaaaatgctgaaaaaagcgaaggatttcaacaacagcaacttgatacaagtccagtggag
gatgagaaaaaaatagatattgagcaagaaccgatagaaaagaaagctataagaaaaggc
agaaaaaagaaggcagattccatacctgagacaccatctgttgaggataaggaaacggaa
gatacaaaacaggagccggagaataaggttagaactaagcctaaagttatagttgagagt
aaggctgagaaagactctgaacaagagaccgaaaaagagaagccggaaattcaaccgaag
gttcaaaagaaagatttgacagatgatgagaatgagaagcaagaagttgatgataatgca
aagcctgaagaagagacaaaggtacaaaaacgtcctaataactatcctgctgcttttgag
aagattgaaagtgatgatccggtaggcggagtgctggaagtattgcctgacggatatgga
tttttaagaggtgaaaactacttgtcgggggcgaaggatatatatgtatcaccatcccag
ataagaagattcaatctgaaaacaggtgacaagattgtggggaaaggtagaatccccaaa
gaaggagaaaagtttcaagcattattatatgtacagcaggtgaatggagatcatcctgaa
gttgcagcgagaagacagcctttcgaaacattgacaccgatatacccggaaaaaaggatc
acccttgaaacaggtccgcgagagttagcgatgaggcttatcgatttaatcgcacctatc
ggtaagggtcaaagaggaatgattgtagctccaccgaaagcaggaaaaacaattctctta
aaaaagattgccaatagtatttctattaattatccagatactgaattaattgtattactg
atagatgagcgtcctgaagaagttactgatatgcagcgctctattaaaggtgaagtgatc
tattctacttttgatgaagtgccggagcatcatatcaaagtagcggaaatggttttggaa
agagcgcagagattggttgaacatcagaaagatgtagtcatactacttgacagtattacc
agattggcgagagcttataatctaacaattccgcctaccggcagaacgctttcaggaggg
ttggacccgggtgcgctgcataagccaaagagattttttggatcagcaagaaatattgag
tttggcggaagtcttaccattcttgctactgcgcttattgagacaggaagcaggatggat
gatgttatctttgaagaattcaaaggtaccggtaacatggaactgcatcttgacagacgc
ttatcggagaagaggattttccctgcaatagatattaacaagtcgggtaccagaaaagaa
gagttactgctttctcaaaaagaattggaaacaatttgggcaattagaaaggcaatgagt
aatcaaggaactgctgaagttactgagacacttattaaccgtttaatgtctacaaaatcc
aatgatgattttgttaataatattgtgaatacctttgataggtaa
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