Petroclostridium sp. X23: QKW49_16715
Help
Entry
QKW49_16715 CDS
T09049
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
petr
Petroclostridium sp. X23
Pathway
petr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
petr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QKW49_16715 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
petr03021
]
QKW49_16715 (rpoC)
03400 DNA repair and recombination proteins [BR:
petr03400
]
QKW49_16715 (rpoC)
Enzymes [BR:
petr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QKW49_16715 (rpoC)
Transcription machinery [BR:
petr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QKW49_16715 (rpoC)
DNA repair and recombination proteins [BR:
petr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QKW49_16715 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
WHH57466
LinkDB
All DBs
Position
3556401..3559916
Genome browser
AA seq
1171 aa
AA seq
DB search
MFEFNNFQAIKIGLASPEKIREWSKGEVKKPETINYRTLKPERDGLFCERIFGPQKDWEC
HCGKYKRIRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDM
SPRALEKILYFASYVVIDAGKTPLMKKQLLSEKEYRDSMEKYGNKFKAGMGAEAIKDLLQ
EIELESLSKELRRDLKDASGQKKIRTIKRLEVVEAFRQSGNRPEWMIMDVVPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLFQCGLPKE
MALELFKPFVMKKLVNDGLAHNIKSAKRMVERVKNEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPVLVEGRALKLHPLVCTAYNADFDGDQMAVHVPLSAEAQSEARFLMLSANNLL
KPQDGRPVAVPTQDMVLGSYYLTLEKKGDKGEGKIFSNFNEAILAYESGVVSLHAAVKVR
VRKMIDGELKSKLIDATVGRILFNEAIPQDLGYVDRTDPDKIFDLEINFLVDKKPLGKIV
DRCIRTHGTTETAIVLDRIKSLGFKYSTRGAITISVSDMEIPGAKKDFLAQAEEKVDKIT
KQYKRGLISDEERYNLVIATWNQTSESVTNALMDHLDRFNPIYMMAHSGARGSINQIRQL
AGMRGLMANTSGRTIEIPIRANFREGLNVLEYFISTHGARKGLADTALRTADSGYLTRRL
VDVSQDVIVREIDCGTTEGMVLKDIKDGNEIIEGLEDRLLGRYTMEDVLHPETGEVIVPS
GHMMSDDDAAKIVKANVKKVKIRSVLTCHSKSGVCAKCYGSNLATGEEVNVGEAVGIIAA
QSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVEELFEARKPKGLAIVAEIPGTVKNSESK
KKREIIISNNETGESKTYLIPYGSRIKVADGDVVEAADELTEGSVNPHDILKIKGRQAVQ
AYMIQEVQRVYRLQGVDINDKHIEVIVRQMLRKVKLDESGDTDLLIGSLVDMFEFEQKNN
EALEQGLEPAQGGRVLLGITKASLATESFLSAASFQETTRVLTEAAIKGKIDPLVGLKEN
VIIGKLVPAGTGMTRYRDISIESVEEPLVIE
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgtttgagtttaataatttccaggcaattaagataggtcttgcatctccggaaaaaatt
cgtgaatggtccaaaggtgaggtaaaaaaacctgaaaccattaactacaggacgttaaaa
cctgagagagacgggctgttttgtgaaagaatcttcggacctcaaaaagactgggaatgc
cattgcggtaaatacaaaagaatccgctacaaaggcatcgtttgtgaccgttgcggtgtt
gaggtaacacggtcgaaggttagacgtgaacgtatggggcatattgagctggctgcccct
gtatcacatatatggtattttaaagggattccgagcagaatgggcttgatcttggatatg
tcaccccgggcattggaaaaaatcctttattttgcatcctatgtagtcattgacgcagga
aaaacacctttaatgaaaaagcagctgctttcagaaaaggaatatagagactcaatggag
aaatacggcaacaaatttaaggccggtatgggcgcggaagcaatcaaagaccttctgcag
gaaatcgaattggaatcactttcaaaagagttaagaagagatttgaaagatgcgtcaggc
cagaaaaaaataagaaccattaagcgtcttgaagttgttgaagccttcagacagtcaggc
aacagaccggagtggatgatcatggatgtcgtgcctgttattccgccggagcttagaccg
atggtacaattagatggcggtagatttgccacttccgaccttaatgatttatatcgaaga
gtaatcaatagaaataaccgtttaaagagactgttggatttaggtgcgcctgatatcatc
gtaaggaatgagaagagaatgcttcaggaagctgtagacgcgcttattgataatggccgc
agaggaagaccggttacaggaccgggaaatagacctctaaaatcactgtccgatatgcta
aaaggaaaacagggacgtttcagacagaacttgttgggtaagcgtgttgactactccggg
cgttcggttatcgttgtaggccctgaacttaaattgttccaatgcggtcttccgaaggaa
atggctctggaattgtttaaaccgtttgtaatgaagaagctggtgaatgacggtttggca
cataacatcaagagtgccaagagaatggtagaaagagtaaaaaatgaagtatgggacgta
ttggaagaggtaatcaaagagcacccggtgctgttaaatcgtgcgcctacactgcataga
cttggtatacaagcatttgaaccggtacttgttgaaggtagagcgcttaagcttcatcct
cttgtatgtaccgcatataatgctgactttgacggagaccagatggcggttcacgtacca
ttgtctgccgaagcgcagtcggaagcaaggttcctcatgctttcagccaataacctgctt
aagcctcaggatggacgtccggttgccgtacctacacaggatatggtattgggaagctac
tatctgacccttgagaaaaaaggcgacaaaggagaagggaaaatattctccaactttaat
gaagcgattttagcctatgaaagcggagtagtcagcctgcatgctgccgttaaagtcaga
gtaagaaaaatgattgatggagagctaaagagtaaactgattgacgcaacagtaggaaga
atcttattcaatgaagcgattcctcaggatttaggatatgtagatagaaccgatcctgac
aaaatatttgatttggagattaacttcttagtcgataagaagccgttaggcaagattgtc
gatagatgtataagaacacatggtacgacggagacagcgattgttctggatagaattaaa
tcattgggctttaagtattcaacccggggcgcgattaccatcagtgtatccgatatggag
attccgggagccaagaaagacttccttgcgcaggcggaagaaaaggttgataagattacc
aagcagtataagagaggtcttatctccgatgaagaaagatataatcttgttatagcaact
tggaaccagaccagtgagagtgttactaatgcactgatggaccatttggaccggttcaat
ccgatctatatgatggcgcattccggtgcgagaggtagtatcaaccagatccgtcagttg
gcggggatgagaggtctgatggcgaatacatcaggtcgtaccatagaaataccgatcaga
gcgaatttccgtgaaggtctgaatgtattggaatacttcatatccactcatggtgccaga
aaaggtttggcggatacggcgttaagaacagctgactcgggatacctcacaagaagattg
gtagatgtcagtcaggatgttattgtaagagagatagattgcggaaccactgaaggaatg
gtacttaaagatatcaaagacggtaatgagatcatagaaggcttggaggatagactatta
ggccgctatactatggaagatgtgctgcaccctgaaacaggagaagtgattgttcctagc
ggacatatgatgagtgatgatgatgccgcaaaaatcgttaaagctaacgttaagaaagtg
aagatacgttcggtgctcacctgtcattccaaatccggtgtatgcgcaaaatgctatggc
tccaaccttgctaccggcgaagaagtaaatgtaggcgaagcggtaggtattatcgcagcc
caatccatcggtgagcccggaacgcagctcaccatgagaaccttccataccggcggggtt
gcaggggatgatatcacacagggtctacctagagtagaagaactatttgaagccagaaaa
cctaaaggattggcgatcgttgcggaaatacccggtactgtgaagaatagtgaatccaag
aagaaaagagagatcattatttctaataatgaaaccggagaatctaagacatatctcatc
ccttacggttcaagaatcaaggtagccgatggcgatgtagtagaagcagcggacgaatta
accgaaggttcggtaaatccgcatgatatattaaagatcaagggacggcaggctgtgcag
gcatatatgatccaggaagtacagcgagtgtacagactccagggtgttgatatcaatgac
aagcatatcgaagtcattgtaagacagatgcttcgtaaggtgaagcttgatgaatcggga
gataccgacctgttaatcggcagcttggtagatatgtttgaatttgaacaaaagaacaat
gaagctttggaacaaggacttgaacctgcccaaggcggtcgtgtactgcttggtatcacc
aaagcatctctggcgaccgagtccttcctatcagcggcatctttccaggaaaccacacgg
gtacttacggaagccgcgataaaaggaaagatagatcctcttgtagggttgaaagaaaat
gttattatcggtaaacttgttcccgcaggaacaggtatgacgcgatacagagatataagc
atcgaatctgtcgaagagccgctggtaatcgaataa
DBGET
integrated database retrieval system
