Populus euphratica (Euphrates poplar): 105107938
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Entry
105107938 CDS
T05872
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105107938
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
peu03019
]
105107938
Messenger RNA biogenesis [BR:
peu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105107938
mRNA degradation factors
5'-3' decay
Decapping complex
105107938
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EDC4_C
WD40_WDHD1_1st
Ge1_WD40
WD40
WD40_CDC20-Fz
WD40_Prp19
WDR55
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
Beta-prop_Vps41
Beta-prop_EML_2
Beta-prop_HPS5
Beta-prop_TEP1_C
Beta-prop_CAF1B_HIR1
Motif
Other DBs
NCBI-GeneID:
105107938
NCBI-ProteinID:
XP_011000340
UniProt:
A0AAJ6SXS9
LinkDB
All DBs
Position
Unknown
AA seq
1361 aa
AA seq
DB search
MASRNHHQQQPSPSPSQSHSPPLDMNTFFMPTPTSPPPPPQNPSPPLPPNLVVLPPQQIP
SSSYPPPNRTHHFPFPFPPSYPPQQNPNPNNPPPLANMHPQRSLSYPTPSLTPNQQPQDR
SGAEIMALLRPPQNQEPPPLPPPAQDLSGALSNNFMGPVRTPSCTSSKMPKGRRVVGEDV
VYDVDVRLPGEAQPRLEVTPITKYISDPQLCLGRQIAVNKSYICYGLKQGTIRILNINTA
LRSLFRTQSQRVTCMAFFAEDVHLLASAGIDGRINVWKISEGPDEEDKPQITGKTIIAIQ
VVGEGEIKHPKVCWHCYKQEILVVGIGKQVLRIDTNKVGKGEVYSSEAPLQCPVDKLIDG
VQFIGKHDGEVTALSMCQWMTTRLVSSSMDGTIKIWDDLKASPLVVLRPHDGQPVYSAMF
LIATDQPDHIILVTAGPQIRELKIWVSASEEGWLLPNDSDLLNCTQTLELKSSAEPRVEE
AFFNQVVALSQMGLILLANAKRNAIYAVHLDYGPNPASARMDCISEFTVTMPILCLTGMS
DVLHGQSVAQVYCVQTKAIQQYTLELCQCLPPLMENVGSERSDSSVMHDVPNADGYAALE
SRGSKYSDVLLSSASVDVATMQQDAPTSNMESRTIALASSTSDADIVCAPSPPHPRLTRD
LTEFAVGGRFEPGPASSNQPAIDHSDDQQMDPICSNSSNVPSLDSDSRNDERKIVQNNST
TLNLPVTFKHPPHLITPSEILMGASSSEITKVNEGKSEVDSNFLDVVVNNDVSNAEVEVK
IVGETRSTHDGEFSIRGESKRPVFENKENLLCSRASDLDIEMTRECCALPPESNIVEEQG
QVDGVVVSESLSPPSNAGKDEVHDSKKNVSGKVSESSVSAVGPLSTTPSTKGRKQKGRNS
QASGSSSQPPGTFNSENSLNEPVRASNLLATDGGFSQILAMQQSINQLVITQKEMHKQMS
NMIEVPVSKECRRLETALGRSIEKAIKANTDAPCAQFQEENAKNERLLQDHMQQITSLVL
NFISKDLPAILEKAPKKELASVVQVAVRTISPVIDKTVSSVIFESFQRGVGVKAVNQLEK
SVNSKLEATVARQIQAQFQTSGKQALQDSLKAGLEASVIPAFEMSCKAKFEQVDAAFQRG
MVEHTAAAQQHFEVAHSSLALTLRDSINTASSMTKTLSMELADSRRQLSAIAANSGATNP
LAMQPSDGPLASFYEKVETQLDPTKELKRLISECKYDETFTIALQRSDVAVVSWLCSEVG
LQGIMSLSPFPLSQGVLLSLLQQLACDINNDTPRKLEWMTAVAAAILPTDQMIVLYARPI
VEQVVEIVNRARTSPAVTGAELANIRVLMHVLNYLLVTCKR
NT seq
4086 nt
NT seq
+upstream
nt +downstream
nt
atggcatcccgaaatcatcaccaacagcagccatcaccgtcgccatcacaatcacattct
cctcctcttgacatgaacacattcttcatgcccacacccacttcaccaccaccaccaccc
caaaacccttcaccccctcttcctcccaacctcgtggttcttccaccccaacaaatccct
tcctcttcttatcctccccccaataggacccaccacttccccttccccttcccaccctct
taccctccccaacaaaaccctaacccaaacaacccaccacctcttgctaacatgcacccc
caacgttccctctcctatcctacaccctctctcaccccgaaccaacaaccccaagaccgt
tctggtgccgaaatcatggccctcctccgcccccctcaaaatcaagaaccaccaccactc
cctccgccagcccaagacttatccggggctcttagcaataattttatgggtcctgttcgg
acgcctagctgtactagcagtaagatgcctaaggggaggagggtggttggtgaagatgta
gtgtatgatgtggatgttaggttgccaggggaggcacagccgcggcttgaagttacgccg
ataaccaagtacatttcggatcctcagctgtgtttaggaaggcaaattgctgttaataag
agttatatttgttatgggttgaagcaagggactattcggattcttaatatcaataccgca
ttgaggtctttgtttcggactcagtctcagagggtcacttgcatggctttttttgccgag
gatgttcatcttttggctagtgctggaatagatggacggattaatgtctggaagatctct
gaaggtccagatgaggaagataagccacagattacaggaaagactattattgctatccaa
gtagttggtgagggggaaataaagcacccaaaagtctgttggcattgttataaacaggaa
attttggtggtcggaattggtaaacaagttctgagaattgatactaacaaagttggaaag
ggtgaggtctattcctctgaggcacctcttcagtgtcctgttgacaagctgattgatggg
gtccaattcattggtaaacatgatggagaagtcactgctttgtcaatgtgccaatggatg
accacccgtttggtttcttcttctatggatggcacgataaagatttgggacgatctcaag
gcatcaccacttgtggttttgagaccacatgatggccaacctgtttattcagccatgttc
ttgattgctactgaccagccagatcacatcattcttgtcacagcagggcctcagattagg
gaattgaagatttgggtctcagccagtgaagaaggttggctcctgcctaatgattctgat
ttgttgaattgcacccagacattagagctgaagagttcagctgaacctcgagttgaggag
gcattcttcaatcaagtagtagcattgtctcagatgggccttattttacttgcaaacgca
aagaggaatgctatttatgccgtgcacttagattatggtcctaatccagcatcagctcgt
atggattgcatatcagagtttactgtcactatgcctatcttgtgtttaaccgggatgagt
gatgtcctgcatggccaatctgtcgctcaagtttattgcgtacagacaaaggcaattcaa
cagtatactttggaattatgccagtgcctgccaccattgatggagaatgtgggttcagag
aggtcagattccagtgtaatgcatgatgtacctaatgctgatggatatgctgccttggag
tcacgtggaagtaaatattctgatgttcttctgagctccgcatcagttgatgtggccact
atgcaacaagatgctcccacttcaaatatggaatccagaactattgctttagcctcatca
actagtgatgctgatattgtttgtgctccttcgcctcctcatcctcgcttaactagagat
cttactgagtttgcagttgggggaagatttgagccaggtcctgcatccagcaaccaacca
gctatcgatcattcagatgaccagcaaatggaccctatttgttcaaattcatccaatgtg
ccttccttggatagtgactcgaggaatgatgagaggaaaattgtacaaaataattctacc
actcttaatcttcctgttacatttaaacatccacctcatctaataaccccttctgagatt
ttaatgggtgcttcatcctctgaaattaccaaagttaatgagggaaaaagtgaggttgac
tcaaattttctggatgtggttgtcaataatgatgtttccaatgctgaggtggaagttaaa
atagtgggtgaaacaagatccactcatgatggtgaatttagtattcgaggagaatccaaa
aggcctgtttttgaaaacaaggaaaatctcctttgctcccgggcttcagatcttgatatt
gagatgacaagagagtgctgtgcattgccaccagaatcaaatattgtggaggaacaagga
caagttgatggtgttgttgttagtgagtctctttccccaccttctaatgctggcaaagat
gaagtccatgactcaaaaaaaaatgtatctggaaaagtttctgagtcttctgtgtcagca
gttggtccactgtcaactactccaagtacaaaagggaggaagcagaaggggagaaattct
caagcatcgggttcatcttctcaacctccaggcacttttaattcagaaaattctttgaat
gaacctgtcagggcttcaaatctccttgctacggatgggggtttttctcaaattttggct
atgcagcaatcgattaatcagctagtgatcacacaaaaggaaatgcataagcagatgtca
aatatgattgaagtccccgtttctaaagaatgtagaagactggagacggctttgggacgg
agcattgagaaagccatcaaagcgaatactgatgctccgtgtgctcaatttcaagaagag
aatgcaaagaatgagaggttattgcaagatcacatgcagcagataacaagtctggtcttg
aattttatcagtaaggacttgccagccatattagagaaagcaccgaagaaagaattggct
tcagttgtacaggttgcagttcgcacaatatctccggtcattgataaaacagtatcttca
gttatatttgagtctttccagagaggagttggtgttaaggctgtgaatcaactggaaaaa
tcagttaattcgaaacttgaggctaccgttgctaggcaaattcaagcacagtttcaaact
tctggcaagcaagctctccaggattctttgaaggctggtctggaagcctcagtaattcct
gcctttgagatgtcatgcaaagccaagtttgaacaagtagatgctgcctttcagagaggg
atggtcgagcatacagctgcagcacagcagcattttgaagttgcccattcttctttggca
ctcactttaagggattcaatcaacacagcatcgtcaatgacaaaaaccttgagcatggag
ctggctgatagtcgaagacagctgtcagctattgccgcaaactcaggtgcaacaaatcca
ttggccatgcaacctagcgacgggcccttggctagcttctacgagaaggttgaaacacag
ctggatccaacgaaagagctaaaaagattaatatctgaatgcaaatacgatgagactttc
actattgcgctccaaagaagtgacgtggctgttgtatcctggctgtgcagtgaggttgga
ttgcagggtatcatgtctctgtctcccttccctctaagccagggagtattactctctctg
ctgcagcagctggcctgtgatataaacaatgatactccccgaaagcttgagtggatgacg
gcggtggcagctgcaatactgccaactgaccaaatgattgtattatacgcacggccaatt
gttgagcaagtcgttgagattgtgaaccgtgcaaggacctcacctgccgtcactggtgcc
gagcttgcaaacatccgcgttctcatgcatgtccttaattacttgctggtgacctgtaaa
cgatga
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