Populus euphratica (Euphrates poplar): 105108047
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Entry
105108047 CDS
T05872
Name
(RefSeq) ATP-dependent RNA helicase DHX36-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105108047
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
peu03019
]
105108047
03012 Translation factors [BR:
peu03012
]
105108047
Enzymes [BR:
peu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105108047
Messenger RNA biogenesis [BR:
peu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
105108047
Translation factors [BR:
peu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
105108047
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
AAA_19
T2SSE
nSTAND3
AAA_16
ATPase
AAA_30
Myosin_head
Motif
Other DBs
NCBI-GeneID:
105108047
NCBI-ProteinID:
XP_011000486
UniProt:
A0AAJ6TN73
LinkDB
All DBs
Position
Unknown
AA seq
1202 aa
AA seq
DB search
MPCCIRMNTIMSLRPTSTKTAKSLHFHYKAKTTLKPSLFSSSSFVSVRNHQTLSFTNQPL
PRPLRFRHHGIFSFKCFVVADFHSKELALPYTRSIQSFNYGRFAYRDVSSDESDYELGSS
QKEMTGSTLDNVDDWKWKLTMLLQSKDQQEVVSREKKDRRDFEHLSAMATRMGLHSRQYS
RVVVFSKVPLPNYRHDLDDKRPQREVILPFGLQREVDAHFKAYISKKPTSRGFFPPNSLS
RSNSGGSMDTDERIYEQPELSVQNSVAMERILSRKSLQLRNQQEKWQESPEGQKMIEFRR
SLPAYKEKDVLLKAVSENQVIVVSGETGCGKTTQLPQYILESEIEAARGAACSIICTQPR
RISAMAVSERVAAERGEKLGESVGYKVRLEGMRGRDTRLLFCTTGILLRRLLLDRNLKGV
THVIVDEIHERGMNEDFLLIVLRDLLPRRPELRLILMSATLNAELFSSYFGGAPTIHIPG
FTYPVRAHFLENILEITGYRLTPYNQIDDYGQEKTWKMQKQAQAFKKRKSQIASSVEDAL
EVADFKGCSSRTRESLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKD
QLQAHPILGDPCRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVF
VVDCGKAKETSYDALNNTPCLLPSWISKAAARQRKGRAGRVQPGECYHLYPRCVYDAFAD
YQLPELLRTPLQSLSLQIKSLQLGSISEFLSRALQPPEPLSVQNAVEYLKLIGALDEHEN
LTVLGRHLSVLPVEPKLGKMLILGTIFNCLDPIMTVVAGLSVRDPFLIPFDKKDLAESAK
AQFAGRDCSDHLALVRAYNGWKDAERQQSGHEYCWKNFLSAQTLKAIDSLRKQFFYLLKD
TGLVDKQIENCNSRSIDEHLMRAVICAGLFPGLCSVVNKEKSITLKTMEDGQVLLYSNSV
NAGVPKIPYPWLVFNEKVKVNSVFLRDSTGVSDSVLLLFGGNIERGGLDGHLKMLGGYLE
FFMKPTLGDMYLSLKRELEELIQNKLLDPKLDIQSHNELLMAIRLLVSEDQCEGRFVFGR
QLPAPSKKAEKAKNVAGDGGDNSKNELQTLLARAGHESPAYKTKQLKNNQFRSTVFFNGL
DFAGQPCSSKKLAEKDAAAAALLWLKGETHSYSRNTDHFSVLLKKSKTTNQNRIPVRGGK
WN
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atgccttgctgtatcagaatgaacacaatcatgtctctaagacccacttccaccaaaaca
gcaaaatctctccatttccattacaaagctaaaaccacccttaaaccctctttattttct
tcatcatcttttgtttccgttagaaaccaccaaaccctatcttttactaaccagccattg
ccccgccctcttcgattcaggcatcatgggattttttcattcaagtgttttgttgttgct
gattttcattccaaggaacttgctttgccatataccaggtctatacagagctttaattat
ggcaggtttgcttaccgggatgtttctagtgatgaatccgattatgaattaggctcctcc
cagaaggaaatgactggctcgacccttgacaacgttgatgattggaaatggaagttaacc
atgcttcttcaaagtaaagatcagcaagaagttgtatccagggagaaaaaggacagacgt
gattttgagcatctatcagctatggcaacccgaatgggtttacacagccgtcaatattca
agagttgttgtgtttagtaaagtccccttgccaaattacagacatgatctggatgataag
cgtccacagagagaggtgatcttaccttttgggttacaaagagaagtagatgctcatttc
aaagcttacatttccaaaaagcccacgagcagaggattttttcctcccaattccttgtca
agatcaaacagtggtgggagtatggacaccgatgaaagaatctatgagcagccagaactg
tcagtacaaaatagtgttgccatggagagaattcttagtcggaagagtttgcagcttcgt
aatcaacaggaaaagtggcaggaatctcctgagggccaaaagatgatcgaatttcgtaga
agccttcctgcatataaagaaaaggatgtgctgttaaaagctgtatctgaaaatcaggtt
attgttgtctctggtgaaactggttgtggtaaaaccacacaacttcctcaatacatacta
gaatctgagattgaagctgctcgcggagctgcatgtagtattatatgtacacagcctaga
agaatatcggctatggctgtttctgaaagagttgctgcagaacgaggggagaaactggga
gaatcagttggttataaagttcggctcgagggtatgagaggaagggacactcgacttcta
ttctgtacgactggcatattgttgaggagattacttctggacagaaatttaaaaggtgta
actcatgtcatcgttgatgagattcatgaacgtggaatgaatgaagatttccttcttatt
gtactgagagatctgcttcctcgtcgaccggagttgagattgattttgatgagtgcaacc
ttaaatgcagagcttttctcttcctactttggtggtgctccaacaattcatattcctggt
ttcacatatcctgtccgtgcacattttttagagaatattcttgaaataactgggtatcgg
ctgactccttacaatcaaattgatgattatggtcaagaaaagacgtggaaaatgcaaaaa
caagctcaagctttcaaaaagaggaagagccagattgcttcttctgttgaggatgccctt
gaagttgctgactttaaggggtgtagttcacgcactcgggagtctttatcttgttggaat
cctgactcaattggttttaacctcattgagcatgttctttgtcacatagttaagaaagag
agacctggtgctgtgttggtttttatgactggttgggatgacattaactctttaaaagat
cagctacaagctcatcctatcttgggtgatccttgcagagtattgttactggcctgccat
ggttccatggccagctctgagcagaggttaatatttgataaacctgaagatggagtgagg
aaaattgtcttagctacgaatatggctgagactagtattactatcaatgatgtggtattt
gtggttgattgtggaaaggcaaaggagacatcgtatgatgctttaaataatactccttgt
ttgcttccatcctggatctcaaaggctgctgcccggcaaagaaagggaagagctggtcgt
gttcaacctggcgagtgttatcatctttatcccagatgtgtttatgatgcatttgctgac
tatcaattaccagaacttttgaggacacctttacagtctttgagtttgcaaatcaaaagt
ctccaacttggaagtatatcagagttcctatcaagggccctgcagccaccagagcctcta
tcggttcaaaatgctgttgagtatttgaagttgattggggctttagatgagcatgaaaat
ctgacagtgctaggacgtcatttgtcggtgcttccagttgagcctaagctcgggaaaatg
cttatattggggaccattttcaactgcttagatccaataatgactgtcgttgctggtctc
agtgttagagatccattcttaataccatttgacaagaaggatctcgcagagtctgcaaaa
gcacaattcgctggtcgtgattgcagtgaccatcttgcacttgtccgggcctataatggt
tggaaagatgcagaaagacaacaatctggtcatgagtactgttggaagaattttctttct
gcacagactctaaaagccattgattccttaaggaaacaattcttttacttgctcaaggat
actggactggttgataagcagatagaaaattgcaattcaaggagcattgatgagcatctt
atgcgagcagtcatctgtgctggcctgttccctggattgtgctctgttgtgaacaaagag
aagtcgataacactgaaaacaatggaggatggccaggtgcttctgtactcgaattctgtg
aatgctggggtgcccaaaattccatacccttggttagttttcaatgaaaaagtgaaagtg
aattcagtttttctccgtgattcaactggtgtttctgattccgtgctgcttttatttgga
ggaaacattgagaggggtggactagatgggcacctaaaaatgttgggaggatacttggaa
ttttttatgaaacccacattaggagatatgtatttaagcttaaaacgtgagcttgaggaa
ctgattcagaataaacttctagatcccaagttggatatacagtcccacaacgagcttctg
atggcaataagattgctggtttcagaggaccaatgtgagggtagatttgtatttggtcga
cagctgccagcaccctcaaagaaggcagaaaaggccaaaaatgttgctggtgatgggggt
gacaattctaagaatgagcttcaaactttacttgccagagcagggcatgaatcacctgct
tataagacaaaacaactgaaaaacaaccagttccgttctactgttttctttaacgggctg
gactttgctgggcagccttgcagcagtaagaaacttgcagaaaaggatgcagctgctgca
gctctactgtggttgaagggggagacacattcatattccagaaatactgaccacttctcg
gtgcttctgaagaagagcaagaccacaaatcaaaacagaatcccagttcgtggtggtaaa
tggaattag
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