Populus euphratica (Euphrates poplar): 105108411
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Entry
105108411 CDS
T05872
Name
(RefSeq) LOW QUALITY PROTEIN: transcription initiation factor IIF subunit alpha-like
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105108411
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
peu03021
]
105108411
Transcription machinery [BR:
peu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
105108411
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
105108411
NCBI-ProteinID:
XP_011001011
UniProt:
A0AAJ6SYS3
LinkDB
All DBs
Position
Unknown
AA seq
527 aa
AA seq
DB search
MSFDLLLKPSXXRCGSTTDLYGSNCKHMTLCLTCGKAMAENRGKCFDCGTTVTRLIREYN
VRASTSSDKNYFIGRFVTGLPSFSKKKNAENKWALHKEGILGRQITDALREKFKNKPWLL
EDETGQSQYQGHLEGSQSATYYLLMMTGKEVVAIPAGSWYNFNKVAHYKQLTLEEAEEKM
KNRRKTADGYERWMMKAANNGAAAFGEVEKVDDKEGVSAGGRGGRRKASGDDDEGNVSDR
GEEDEEEEAGRKSRLGLNKQGGDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDEAV
AIDPEEREDLAPEVPAPPEIKQVCLSKSGXELKKLLGKANGLNESDVEDDDDDEDMDDDI
SPVLAPKQKDVVPKEEATDISPAKPMPSGSAKGTPSTSKSAKGKRKLNGEDAKSSNGAPV
KKVKTENEVKPAMKEESSPATKGTATPKVTPPSSKTGSSSGSTGPVTEEEIRAVLLQNGP
VTTQDLVARFKSRLRTPEDKKAFADILRRISKIQKTSGSNYVVLRDK
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttcgatcttctgttaaagccgtcgtnnngccgctgcggcagcaccacagatttg
tacggaagcaattgcaagcacatgacgctttgcttgacttgcggcaaagcaatggcggag
aatcgcggcaaatgcttcgattgtggcactactgtcactcgcttgattcgagagtataat
gttagggcgagtacgagtagcgacaagaattattttataggaagattcgtcacaggattg
ccgagtttttccaagaaaaaaaatgcggaaaataaatgggctttgcacaaagaaggaatc
cttggtcgtcagattactgatgctttgagggagaagtttaagaataagccttggctattg
gaggatgagactgggcagtctcagtatcagggtcatcttgaagggtcgcaatcggcgact
tattatctgttgatgatgactgggaaagaggttgttgctattcctgccgggtcctggtac
aactttaacaaggtagcgcattataagcaacttacgttggaggaagcagaggagaagatg
aagaataggaggaagactgcggacgggtatgaaaggtggatgatgaaagctgcaaataat
ggagctgctgcatttggtgaggtggagaaggtagatgataaggagggtgtttcagctggt
gggagaggtgggcgtcggaaagcaagtggtgatgatgatgagggaaatgtgtctgacagg
ggagaggaagatgaagaggaggaggctggaaggaagagtagactcggactcaataaacag
ggtggtgatgatgatgaagaaggtccaagaggaggtgatcttgatatggatgatgatgat
attgagaagggtgatgattgggagcatgaagaaattttcaccgatgatgatgaagctgtc
gccattgatcctgaggaacgggaggatttggccccagaagttcctgctcctcccgaaatc
aagcaggtctgtttgagcaaatctgggtaagagttgaagaaactactagggaaagcaaat
ggtctaaacgagtcagatgtagaagatgacgacgacgacgaggatatggatgatgatatt
tctcctgtactggctccaaagcagaaggatgttgtgccgaaggaggaagccactgatatt
agtcctgcaaaaccaatgccttcaggttctgctaagggaaccccttctacctccaagtct
gccaaggggaaaagaaaattgaatggtgaagatgcaaaatcttctaatggtgcacctgtg
aagaaggtgaagacagaaaatgaagtaaaacctgccatgaaagaagaaagctcgcctgct
actaaaggtactgcaactcctaaagtaacaccgccatcatcaaaaacagggtcatcatca
ggttctactggacctgtcactgaagaagagatcagggctgttttgttgcaaaatgggcca
gttaccacacaggatctggttgctaggtttaaatcacgactaaggactcctgaggacaag
aaagcttttgcagatattctgaggagaatttctaagattcaaaagaccagtggatctaac
tatgttgtgctgagggacaaatga
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