Populus euphratica (Euphrates poplar): 105108494 Help Entry 105108494         CDS       T05872                                  Name (RefSeq) pre-mRNA-splicing factor SYF1   KO K12867   pre-mRNA-splicing factor SYF1 Organism peu  Populus euphratica (Euphrates poplar) Pathway peu03040   Spliceosome Brite KEGG Orthology (KO) [BR:peu00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     105108494  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:peu03019]     105108494    03041 Spliceosome [BR:peu03041]     105108494 Messenger RNA biogenesis [BR:peu03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     Other transport factors      105108494 Spliceosome [BR:peu03041]  Complex B   Other components    Prp19-related factors     105108494  Complex C     105108494 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  HAT_Syf1_CNRKL1_C HAT_Syf1_M HAT_Syf1_CNRKL1_N HAT_PRP39_N HAT_PRP39_C TPR_14 Suf Mad3_BUB1_I TPR_19 TPR_15 TPR_12 ARM_TT21 UTP6_C Motif Other DBs NCBI-GeneID:  105108494 NCBI-ProteinID:  XP_011001120 UniProt:  A0AAJ6SZA6 LinkDB All DBs Position Unknown AA seq 908 aa AA seqDB search MSISKELYPSQDDLLYEEEILRNPFSLKLWWRYLIARRESPFKKRFIIYERALKALPGSY KLWHAYLVERLDIVRNLPITHPQFETLNNTFERALVTMHKMPRIWIMYLQSLIRQKLVTR ARRAFDRALCALPVTQHDRIWELYLSFVSQEGFPIETSLRVYRRYLMYDPSHIEDFIEFL LNSGLWQEAAERLASVLNDDQFYSIKGKTKHSLWLELCDLMTRHAKEVSGLNVDAIIRGG IRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMTTVVTVRDFSVIFDAYSQFEESMV AIKMEKMDLSDDEENEVEENGIELDEDVRLDWSSKFEKKLLNGFWLDDDNDVDLMLARLE YLMDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVRTVDPMKAVGKPH TLWVAFAKLYEDHNDLVNARVIFDKAVQVNYKTVDNLASVWCEWAEMEIRHRNFKGALEL LRRATAEPSVEVKRRVAADGDEPVQIKVHKSLRLWAFYVDLEEGLGTLESTRAVYERILD LRIATPQIIINYAWLLEEHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTK LERARELFEHAIEMAPADSVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNNEKLSMY EIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKTMCLKYADLEKNLGEIDRARGIYVFA SQFADPRSDLDFWNQWHEFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQKDQR LNIDDAKDKLKQAGLPEDEMAALERQLAPAINKTTARDSSRTVGFVSAGVQSQSDGGMQV TANQEDIELPEESDSEDDEKVEIAQKDVPSAVFGGLAGKREEPEKDDAKDGGSRLGALER IKRLKRGG NT seq 2727 nt NT seq  +upstreamnt  +downstreamnt atgtcgatttccaaagaactgtacccttctcaagatgatcttctctacgaagaagaaatc ttgagaaaccctttttctttgaagctctggtggcgctatttgattgctcgaagagaatcc cctttcaagaaacgcttcataatttatgaacgagctctcaaagcgttgcctggaagctac aagctctggcatgcttatttggttgagcggctcgatatagttcggaatttgcccattact catcctcagtttgaaactcttaataacacttttgagagggctttggttaccatgcataag atgcctcggatctggattatgtatttgcagagtttgattcgtcagaagttagtgacgagg gcgaggagggcttttgatagggctctctgtgcgttgcctgttacacagcacgataggatt tgggagttgtatttgagttttgtgagtcaagagggttttcctattgagacctctcttagg gtttataggaggtatttgatgtatgacccgagtcatattgaagattttattgagtttttg ttgaattctgggctttggcaagaggctgcagagaggttggcgtcggtcttgaatgatgat cagttttattcaattaaggggaagaccaagcatagcttgtggcttgagttgtgtgatttg atgactaggcatgcgaaggaggtttcagggttaaacgtggatgcaattattaggggtggg attaggaagtttacagatgaggttgggaggctgtggacttcgcttgctgattattatatc aggagggaattgtttgagaaggcaagggatatttttgaggaggggatgactactgtggtt actgttagggatttcagtgttattttcgacgcttactcacaatttgaagagagtatggtt gctatcaagatggagaaaatggatttgagcgacgatgaggaaaatgaggttgaagagaat ggtatcgagttggatgaggatgttcggttggattggagttccaagtttgagaagaagttg cttaatggcttttggttagatgatgacaatgacgtggatttgatgctagcacgtctggag tatttaatggatagaagaccagaattggcaaacagtgtgcttcttcgacaaaatccacat aatgtggagcagtggcataggagggtcaagctatttgagggtaatccaacgaagcaaatt ctgacgtatactgaagctgtgaggacggtggatccaatgaaagcagtggggaagcctcat actttgtgggttgcatttgcaaaattgtatgaggatcacaatgatcttgtcaatgcaagg gtaatttttgacaaggcagtgcaagtgaactacaagactgttgataatttggcaagtgta tggtgtgagtgggctgaaatggaaattagacacaggaatttcaaaggtgcgcttgagctg ttgagacgggccactgcagaaccatcagttgaggtcaaacggagagtggctgctgatggg gatgaaccagttcagataaaggttcacaagtccttgagactctgggctttttatgttgat ttggaggagggcctgggtaccttggagtccactcgagcagtgtatgaacggatactggac ctgcgcatagccaccccacaaatcatcatcaattatgcctggcttctagaggaacataaa tattttgaagatgcattcaaggtatatgaaaggggagtcaagatattcaagtatcctcat gtgaaagacatttgggtcacatatctctcaaagttcgtaaagagatacggcaagacaaaa ctagagcgggcgagggagttgtttgaacatgctattgaaatggctcctgccgactcggtg aaaccgttgtatcttcaatatgcaaagctagaagaggactatggtttggcaaagcgagcc atgaaggtatacgaccaagcaaccaaggctgttccaaacaatgaaaaactgagcatgtac gaaatttatattgctcgtgcagctgagatatttggtgttccaaaaacaagggaaatatat gagcaagcaatagagtctggccttccagacaaagatgtgaagacaatgtgcttgaagtat gctgacttagagaagaaccttggagaaattgaccgtgcacgtggcatatatgtatttgca tcccaatttgctgatccacgatctgatttggatttctggaaccagtggcatgagtttgag gttcaacatggaaatgaagataccttcagagaaatgttgcgtattaaacgaagtgtgtct gcaagctatagccagacacattttattcttccggagtatttgatgcagaaggatcagaga ctgaacattgatgatgccaaagacaaattgaaacaggctgggctccctgaagatgaaatg gccgctctggagaggcaattagctcctgcaatcaataaaaccactgctagagacagcagc aggacagtgggctttgtgagtgctggagtgcagtctcagtcggatggagggatgcaggtt actgcaaaccaggaagacattgagcttccagaagagagtgactctgaagacgatgaaaaa gttgaaattgcacagaaggatgttccctctgctgtgtttggtggactggctgggaagagg gaagagcctgagaaagatgatgcaaaggatggtggcagtcgtcttggtgccctcgagagg attaagagactaaaacggggaggatga

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