Populus euphratica (Euphrates poplar): 105109660
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Entry
105109660 CDS
T05872
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105109660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
peu03041
]
105109660
03009 Ribosome biogenesis [BR:
peu03009
]
105109660
Enzymes [BR:
peu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105109660
Spliceosome [BR:
peu03041
]
Complex A
U2 snRNP components
U2 related factors
105109660
Complex B
105109660
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
105109660
Ribosome biogenesis [BR:
peu03009
]
Eukaryotic type
90S particles
Helicases
105109660
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
nSTAND3
SRP54
ResIII
ABC_tran
T2SSE
AAA_30
Flavi_DEAD
PhoH
AAA_7
AAA_33
FtsK_SpoIIIE
TsaE
NACHT
AAA_29
Motif
Other DBs
NCBI-GeneID:
105109660
NCBI-ProteinID:
XP_011002735
LinkDB
All DBs
Position
Unknown
AA seq
728 aa
AA seq
DB search
MGTERKRKVSLFDVVDETSLSAKIVKSNGAMGNNNNGGSSLINRWNGKPYSQRYYDILEK
RKNLPVWHQKEDFLQVLKKNQVIILVGETGSGKTTQIPQFVLEAVDLESPDKRRKMMIAC
TQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPL
LERYKVIILDEAHERTLSTDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFGEAPLM
KVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHLCEPHGDILVFLTGEEEIEDACRKITK
EIGNLGDQVGPVKIVPLYSTLPPAMQQKIFEPAPPPLQEGGPSGRKIVVSTNIAETSLTI
DGIVYVIDPGFSKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSF
NQDLQPQTFPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALD
DEGNMTKLGEIMSEFPLDPQLSKMLVVSPEFNCSNEILSISAMLSVPNCFVRPREAQKAA
DEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYENFVNHRALKAADNVRQQLVRIMAR
FNLKLCSTDFNSRDYYINIRKAILAGYFMQVAHLERSGHYLTVKDNQVVHLHPSNCLDHK
PEWVIYNEYVLTSRNYIRTVLDIRGEWLVDIAPHYYDLQNFPQCEAKRVLEKLYRKRERE
REENRNRK
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgggtacggagaggaagaggaaggtgagtttattcgacgtggttgacgagacgtcgctt
tctgcgaagatcgtgaaatcgaacggggcgatgggtaacaataacaatggaggaagtagt
ttgataaatcggtggaatgggaagccctactcacagaggtactatgatatattagagaag
aggaagaatttgcctgtttggcatcaaaaagaggatttcttacaagttttgaagaaaaat
caggttatcatccttgttggcgagactggtagtggtaaaaccactcagattcctcagttt
gttttggaagctgtagacttagaatctccggataaacgtaggaagatgatgattgcatgt
acccaacctcgaagggtggctgcaatgtctgtttctcgacgtgttgctgaggagatggat
gttacaattggcgaagaggttggttatagcatccgttttgaagactgtagcagtgcgaga
acggttttgaagtatcttactgatggtatgcttttaagagaggcaatgaccgatccactt
ttggaacggtacaaagtaataattcttgatgaggcccatgaaagaactctatcaacagat
gtgctatttgggcttcttaaagaagtgctgaaaaataggcctgacctgaagctagttgta
atgagtgcaacactagaggctgagaaatttcagggttattttggtgaagcacctcttatg
aaagttcctggcaggcttcatccggttgagattttttatacccaggagcctgagagagat
tacctagaggcagctattcggacagttgtccagatacacttgtgtgaaccccatggggac
atacttgttttcctaactggtgaggaggagatagaagatgcttgccgaaaaataacaaaa
gaaattggaaatttaggggaccaagtagggccagtgaaaatagtgcctctatattctacg
cttccaccggccatgcagcaaaaaatatttgaacctgctccacctccactacaggagggt
ggcccgtctggaaggaagattgtggtgtcaacaaacattgcagaaacttctttgactata
gatggtattgtttatgttattgaccctggcttctcaaaacaaaaggtttataacccacga
gtgcgggttgagtctttgttagtttcccccatatcaaaggctagtgctcaccagagatca
ggacgtgctggaagaactcaaccaggcaaatgttttagactctacacagagaagagtttc
aatcaggatctccagccacagacctttccagaaatattgcggtcaaacctggcaaataca
gttctaacgttgaagaaattggggattgatgatctggtgcactttgatttcatggatcct
cctgcccctgagacattgatgcgagcattggaggtgttgaattatttgggagcattggat
gatgaggggaacatgacaaagcttggggagatcatgagtgaatttcccttggatcctcaa
ctgtcaaagatgctcgttgtgagtcctgaattcaactgttcgaatgaaattctttcaatt
tcagccatgctttcagtacccaattgctttgtccgccctagggaggctcaaaaggctgcc
gatgaagcgaaggctaggtttgggcacattgatggggatcacctcacgctgctgaatgtg
tatcatgcatataagcaaaacaatgaggatccatcttggtgctatgaaaattttgtcaat
catagagcattgaaggctgctgacaatgtaagacaacagcttgtgcgtatcatggccagg
tttaacctcaagttatgcagcactgacttcaacagccgtgactactacatcaacataaga
aaagctatattagccggatacttcatgcaggttgctcaccttgaacgatctggacactat
ttgacagtgaaagacaaccaagtggtgcacctgcatccttcaaattgtttggatcacaag
ccagagtgggtgatatacaatgaatatgtcttgaccagccggaattatatacggactgtg
ctagacattcgtggggaatggttggtagacatagcaccacattactatgacttgcaaaat
ttcccgcaatgtgaggccaagcgggttcttgaaaagctttacaggaagcgggagagggag
agggaggagaacaggaacagaaaatga
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