Populus euphratica (Euphrates poplar): 105110032
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Entry
105110032 CDS
T05872
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I isoform X1
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105110032
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
peu03021
]
105110032
03019 Messenger RNA biogenesis [BR:
peu03019
]
105110032
Transcription machinery [BR:
peu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105110032
Messenger RNA biogenesis [BR:
peu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
105110032
U7-dependent histone pre-mRNA processing factors
105110032
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
HAMP_2
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
105110032
NCBI-ProteinID:
XP_011003228
UniProt:
A0AAJ6T2V1
LinkDB
All DBs
Position
Unknown
AA seq
697 aa
AA seq
DB search
MASTGQSQSLKRRDAPITREGGDQLTLTPLGAGNEVGRSCVYMSFKGKTVLFDCGIHPAY
SGMAALPYFDEIDPSTIDVLLVTHFHLDHAASLPYFLEKTTFRGRVFMTHATKAIYKLLL
TDYVKVSKVSVEDMLFDEKDINRSMDKIEVIDFHQTLDVNGIKFWCYTAGHVLGAAMFMV
DIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDICIIESTYGVQLHQPRHLREKRFTDVIH
STISLGGRVLIPAFALGRAQELLLILDEYWANHPELHNIPIYYASPLAKKCMTVYQTYIL
SMNERIRNQFANSNPFKFKHISPLNSIEDFTDVGPSVVMASPGGLQSGLSRQLFDMWCSD
KKNACVLPGYVVEGTLAKTIINEPKEVQLMNGLTAPLNMQVHYISFSAHADYAQTSTFLK
ELMPPNIILVHGEANEMGRLKQKLITEFADGNTKIITPKNCQSVEMYFNSEKMAKTIGKL
AERTPDVDETVSGMLVKKGFTYQIMAPGDLHVFSQLSTGNINQRITIPFSGAFGVIKHRL
EQIYESVESGSDEESGSPTLQVHELVTVKQESDRHISLHWTADPISDMVSDSIVALVLNI
SREVPKVIVESEDIKSEEENEKKAEKVIYALLVSLFGDVKLGENGKLVIRVDGNVAELDK
QSGDVESENEGLKERVRTAFRRIQSAVRPIPLPHPAS
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaacagggcaatcacagtcactaaaaagaagggatgcaccaataacaagagaa
ggaggggatcagctaactctaacccctttaggtgctggaaatgaagtgggtcgatcctgt
gtttacatgtcatttaaaggcaagactgtattgtttgattgtggaattcatccggcttat
tcgggtatggctgctttaccttacttcgatgagattgacccttccactattgatgtgctt
ctcgttacacactttcacttggatcatgctgcatccctaccttattttcttgagaagacc
acattcagaggtcgtgttttcatgactcatgcgacaaaggctatctacaagttgcttttg
actgattatgtaaaagtgagtaaagtttcagtggaagatatgttgtttgatgagaaagac
ataaaccgctcaatggataaaatcgaggttattgacttccatcagactctggatgttaat
ggcattaaattttggtgctacactgctggtcatgtccttggcgctgccatgttcatggta
gatatcgctggtgttcgagtgctgtatactggagactattcacgtgaagaagatcggcat
cttcgtgctgctgagatgccacaattctctccagacatatgcataattgaatctacctat
ggtgtccaactccatcaacctcgacaccttcgggagaagcgcttcactgatgttatccac
tccaccatctctctaggtggtcgtgttctaattccagcatttgctcttggccgagctcaa
gaactccttttgatccttgatgagtattgggcaaaccatcctgagcttcataacattccc
atatattatgcttctccccttgcaaaaaagtgcatgactgtttaccagacatacatcctt
tctatgaatgaaaggatccgcaatcagtttgcgaattcaaaccccttcaaattcaagcat
atatcaccgttgaatagcattgaagattttactgatgtagggccatctgtggttatggca
agtcctggaggactgcagagcgggttgtcaaggcagttgtttgatatgtggtgctctgat
aagaaaaatgcttgtgttttacctggatatgttgttgaagggaccctagctaagacaatc
attaatgaaccaaaggaggtacagctcatgaatggactaactgcaccactcaacatgcag
gtccattacatctcattctctgcgcatgcagattatgctcagacaagtacctttttgaaa
gagctcatgcctcctaacattattctagttcatggagaagccaatgaaatgggaaggctc
aaacagaaacttatcacagagtttgctgatggcaataccaagataatcaccccaaagaat
tgccagtctgttgagatgtatttcaactctgaaaagatggcaaaaaccattggaaagctg
gctgaaaggaccccggatgttgatgaaactgtcagtgggatgctggtgaagaagggcttc
acttatcaaatcatggcacctggagatctccatgtcttctcacaattatcaacgggaaat
attaatcagaggattaccattcctttttctggtgcatttggtgtgataaagcacaggctt
gagcagatttatgagagtgtggagtctggaagtgacgaggagtctgggtctccaacactg
caggtgcatgagctggtaacagtgaaacaagagtctgacagacatatttcacttcattgg
actgctgaccccataagtgatatggtgtctgattcaattgtagctttggttttgaacatc
agccgggaggttcctaaggtaatagtggagtcagaggacataaaatctgaggaagaaaat
gagaaaaaagcagagaaagtgatttatgccctccttgtttcactctttggagatgtgaaa
cttggagagaacgggaagctggtcatacgtgtcgatgggaatgtggcagagcttgacaaa
cagagtggggatgttgagagcgagaatgaaggtctcaaggaacgagtcaggacagcattt
aggcgaattcaaagtgctgtgaggccaatcccgctcccgcaccctgcatcttag
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