Populus euphratica (Euphrates poplar): 105110716
Help
Entry
105110716 CDS
T05872
Name
(RefSeq) uncharacterized protein LOC105110716 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105110716
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
peu03000
]
105110716
03019 Messenger RNA biogenesis [BR:
peu03019
]
105110716
04121 Ubiquitin system [BR:
peu04121
]
105110716
Enzymes [BR:
peu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105110716
Transcription factors [BR:
peu03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
105110716
Messenger RNA biogenesis [BR:
peu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105110716
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105110716
Ubiquitin system [BR:
peu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
105110716
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
zf-UDP
PcfJ
FYVE
Rtf2
Motif
Other DBs
NCBI-GeneID:
105110716
NCBI-ProteinID:
XP_011004152
UniProt:
A0AAJ6T3P5
LinkDB
All DBs
Position
Unknown
AA seq
963 aa
AA seq
DB search
MSDKGDKTCPLCAEEMDLTDQQLKPCKCGYEVCVWCWNHIMEMADKDNSEGRCPACRTPY
DKEKIVGMAANCERLVAEMNSERKLKSHKVKPKTSDGRMHLSNVRVIQRNLVYIIGLPLN
LADESLLQRKEYFGQYGKVLKVSISRTATGAIQHAANNSCCVYITYAKEDEAVRCIQSVH
SFVLEGRSLRACFGTTKYCHAWLKNTPCSIPDCLYLHDFGSEEDSFTKDDLVSAFTRSRV
QQIVGATNNLHRRSGNVLPPSSDESTNRNISSTAKLDASTSLNQNIVNWDSGSCADSGAG
RSNTLHGASSWVTRVAGSLPPVTSLSSSGGTPSYKPETSHGDHGLAPEVVITKSSGDMKR
TIPEGSCEVHPANLTSIDHFSCPPASQDSASDTDEPQAGTSPSKITKLSYFTGLDEDENF
HADGDLQGLCSGLSSISIDDHLKDEYHEPVTSDISISNHKLPKSQGSQPFVSEPPCNSSS
SPTQRECAIVEDLLCFDDREVQGIRSIHHEPLISSLLSPKQYLEQPTYHSWQQGENCQST
IDVHPSIVPAKHDEVAFPFRSGNTVLSNGLHDRQANGLVEWDRSSNYSSVLSEVGPGKCL
EEHGSNVASIDYKLDLDTDESSIISNILSIDSGVWEDSLTSPQSFVKLLADNDKQQSCRK
IPCMRKAQESSQSRFSFARQDGFSNHLSNFEHSLENAANKSSSSNYIIENKDPWMDNYRG
VSSNISSVESNGFLSKHPFTSSFSVSKTSTSPPPGFSVPSRVVPPGFPTHGAVHYDFDHS
GNHFLQNSAPLSRNIGVSGDVEFIDPAIMEVGKGFLSARLNNPGFDAKPALSPHFSPFDH
DSELQMLMRQSISAQQNIRLSDHFRNRFSPPEDTYSISPVLLGQSLPNKPSSFTQLTAQQ
LRNVHISNGSLGGWNEVKNVSDPCMPEFLGNGGMGFSKLVPSYEDLKYQMSGSSNLYNRG
FAM
NT seq
2892 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacaagggagacaagacatgcccattgtgtgctgaggagatggatttgactgat
cagcaattgaaaccatgcaaatgtggttatgaggtctgtgtttggtgctggaaccacatt
atggaaatggccgacaaggataactccgagggtcgttgcccagcgtgtcgtacaccttat
gacaaagaaaaaattgtagggatggcagcaaattgtgaaaggctagtagctgaaatgaat
tcagagagaaaactgaagtcccataaggtgaagccaaaaacatctgatggaaggatgcat
ctaagcaatgttagagtcattcaaaggaatctagtgtatataattggattacctcttaat
cttgcagatgaatcccttcttcagcgaaaagagtactttggccaatatggaaaggtactg
aaggtgtctatatctcgaaccgcaacaggggcaattcaacatgctgcaaacaacagttgt
tgtgtgtatataacatatgcaaaagaggacgaagcagttcgttgtattcaatcagtgcac
agttttgtattagaaggtagatccttgagggcatgctttggaacaacaaaatactgccat
gcatggctgaaaaatacaccttgcagcattccggactgtttatatttgcatgattttggc
tctgaggaagatagttttacaaaagatgatttagtttcagccttcacaaggagtagagtg
caacaaattgttggtgctacaaataatttgcatcggcgttctggaaatgttttgccaccc
tcatcagatgaatccaccaataggaacatatcatccacagccaaacttgatgccagtact
tctttaaatcaaaatattgtgaactgggatagcgggtcatgtgcggatagtggtgctgga
agatccaatacacttcatggggcatcttcatgggttacacgtgtcgctggcagtttgcca
ccggttacaagtttgtcatcatcaggtggaactcccagttataaacctgagacatcacat
ggggaccatggtcttgcgccagaagttgtgatcaccaaaagttctggtgatatgaaaaga
accatacctgaaggaagctgtgaagtgcatcctgccaatctaacatcgattgaccatttt
tcttgtcctccagcatctcaggacagcgctagtgatactgatgaaccacaagctggaact
agcccttcaaaaatcactaaactgtcctattttactggtctggatgaagatgaaaatttt
catgcggatggggacttgcagggactatgctctggattatcatcaattagcattgatgat
caccttaaggatgagtaccatgaacctgttacttcagatatttcaatttctaaccataaa
ctgcccaaaagtcaaggttcacaaccttttgtgagtgagccaccttgtaattcttcatcc
tcgccaacacagcgagaatgtgcaattgttgaggatttactatgttttgatgatcgggaa
gtccagggcattcgaagcatccatcatgaaccactcatatcatctttgctttctccaaaa
cagtatttggagcagccaacctatcattcctggcagcaaggcgagaattgtcaaagcact
attgatgtacatccaagcattgttcctgctaagcatgatgaggtcgcttttccattcaga
tctggcaacactgttttgtctaatgggttgcatgacaggcaagctaatggccttgttgag
tgggataggtcttctaactattctagtgtcttgtcagaggtaggaccggggaagtgcttg
gaagaacatggtagtaatgtagctagtattgactataaacttgatctagacacagatgag
agcagcattatctcaaatattctatccattgattctggtgtatgggaagattcgttgaca
tcacctcagagttttgtcaagttgctggctgataatgataagcaacaaagttgccgcaaa
ataccatgcatgcgaaaagcacaggagagtagtcaatcaaggttctcatttgccaggcag
gatggtttctctaatcatttgtctaattttgagcattcacttgaaaatgcagcaaataaa
tcttcctcctcaaattacattattgaaaacaaggatccttggatggacaattatcgtggc
gtctcttcaaatattagttctgtagaatcaaatggtttcctcagcaagcatccttttaca
tctagtttttcagtttccaaaacttccacgtctcccccaccaggattctcagtgccaagt
agagttgtacctccaggctttcctactcatggggcagtgcactatgattttgaccattct
ggaaatcattttctacaaaactctgcaccactatctcggaacattggcgtctctggggat
gttgaattcattgatcctgcaataatggaagttggcaaaggatttctgtcagcaaggctg
aataatccaggctttgatgcaaagccagctttatctcctcattttagtccttttgatcat
gattcagagcttcagatgctgatgcggcagtcaatttctgcacagcagaacataaggtta
tcagatcacttcaggaatagattctctcccccagaagatacgtattccatttcacctgtg
cttcttggtcaatccctgcccaacaaaccttcatcatttacacaattgacggctcaacag
cttagaaatgtgcacatctcaaatggcagtttgggtggttggaatgaggtaaaaaatgtt
agtgatccttgtatgccagaatttctaggaaatggagggatgggatttagcaaattagtt
cctagttatgaggatttgaagtatcagatgtctggttccagcaatctatacaacagagga
tttgcaatgtga
DBGET
integrated database retrieval system
