Populus euphratica (Euphrates poplar): 105111538
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Entry
105111538 CDS
T05872
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog isoform X1
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
105111538
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
peu04131
]
105111538
Membrane trafficking [BR:
peu04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
105111538
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40
WD40_Prp19
zf_RING_Vps8
WDR55
Beta-prop_EML_2
Beta-prop_HPS5
zf_RING_Vps8_fungal
EIF3I
WDR90_beta-prop_4th
zf-RING_2
Beta-prop_WDR11_2nd
PEP5_VPS11_N
zf-C3H2C3
CENP-B_dimeris
Motif
Other DBs
NCBI-GeneID:
105111538
NCBI-ProteinID:
XP_011005223
UniProt:
A0AAJ6T604
LinkDB
All DBs
Position
Unknown
AA seq
959 aa
AA seq
DB search
MIPIPSENGGDGGDEREEDDEEEEEEEEEEEEVEEEEEEEEEEPRLKYQRMGGSIPTLLS
SDAASCIAVAERMIALGTLDGTVHILDFLGNQVKEFAAHTAVVNDLSFDVEGEYIGSCSD
DGTVVINSLFTDEKALKFEYHRPMRAVALDPGYSRKTSKRFVAGGLAGQLCFNSKKWLGY
RDQVLHSGEGPIHAVKWRTSLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHL
VWQDDTLLVIGWGTFVKIASIRANEQKGANGTYRHVPMSSMNQVDIVASFQTTYYISGIA
PFGDSLVILAYIPVEEDGEKECSSTISSRQGNAQRPEVRVVAWNNDELATDALPIHRFEH
YKAKDYSLAHAPFSGSSYAGGQWAAGDEPLYYIVSPKDVVIAKPRDTEDHIAWLLEHGWH
EKALEAVEAGQGRSELIDEVGSNYLDHLIVERKYGEAASLCPKLLRGSASAWERWVFHFA
HLRQLPVLVPYMPTENPRLRDTAYEVALVALATNPSFHKDLLATVKSWPAVIYSALPVIS
AIDSQLNTSSMTDALKEALAELYVINGQYVKAFSLYADLMKPDIFDFIEKHNLNDAIREK
VVQLMMLDCKCAVPLLIQNKDLISPPDVVSKLLNASNKCDSKYFLHLYLHALFEANPHVG
KDFHDMQVELYADYDLKMLLPFLRSSQHYTLEKAYDICVKRDLLREQVFILGRMGNSKKA
LAVIINKLGDIEEAVEFVTMQHDDDLWEELIRQCLHKPEMVGVLLEHTVGNLDPLYIVNM
VPNGLEIPRLRDRLVKIITDYRTETSLRHGCNDILKTDCVNLLIKYYKEARRALCLSNEE
EARVKRDGRGDSQAIWRTVGARAMEVKSKTRGDTRCCMCFDPFSILDVSVVVFFCCHAYH
MSCLMDSMHTVSGKKGSGATSRMSEYDYDSNDEDDYDDENNNDSGVIRLRCILCTTAAG
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
atgattccaattccgtcggagaatggcggtgacggcggtgacgagcgagaagaagacgat
gaagaggaggaggaggaggaggaggaggaggaggaagtggaagaagaagaagaagaagaa
gaagaggaaccgagactcaagtaccaaagaatgggaggtagcatacctacccttttatcc
agtgatgcggcgtcgtgtatagctgttgccgaacgtatgatcgctcttggaactctcgac
ggcaccgttcacatcctcgatttcctcggcaaccaggttaaggaatttgcggcacacacg
gcggtggttaatgatcttagctttgatgtggaaggagaatatataggaagttgttctgat
gatggcactgttgtaattaatagtcttttcaccgacgagaaggctttgaagtttgaatat
catcggccgatgagggcagtcgctttagaccctggatattctagaaaaacatctaaaaga
tttgttgctggtgggttagctggtcaattatgttttaattccaaaaaatggctaggctac
cgcgaccaggttttgcactctggtgaaggtccaatacatgctgtgaagtggagaacgagt
ctcattgcttgggctaacgatgcgggtgtgaaagtttatgatgccgctaatgatcaaaga
ataacttttattgaaagaccgcgggggagtccgcgtcctgagcttttgctccctcatttg
gtttggcaggatgatactctcttggttattgggtgggggacgtttgtgaaaatagcatcg
ataagagctaatgagcaaaagggtgccaatgggacatataggcatgttccaatgtctagt
atgaaccaggtggatattgtggcttcttttcaaaccacctattatatttcaggaattgct
ccgtttggtgattctttggttattctagcttatattcctgtggaagaagatggagagaag
gaatgtagtagcaccatttcatcaagacagggcaatgcacagagaccagaagtacgtgta
gttgcatggaataatgatgaacttgcaacagatgccctccctatacatcgttttgagcat
tacaaggcgaaggactattcccttgctcatgctcctttctcaggtagcagctatgctggt
ggtcaatgggctgctggcgatgaaccattatactatatcgtatccccaaaggatgtggtg
attgcaaagcctagggatactgaagatcatattgcgtggcttctagaacatggttggcat
gaaaaagcattagaagcagttgaagcaggtcagggcaggagtgaactcattgatgaggtg
ggatccaattatcttgatcatttgattgtggaaaggaaatatggtgaagctgcatctttg
tgtcccaaattgttgcgaggatctgcttcggcttgggagagatgggttttccattttgcg
catttgcgtcagcttcctgtgttggtcccatacatgccaacagaaaatccaagacttcgt
gatactgcctatgaggttgctcttgtagctctggcaacaaatccgtcttttcataaagat
ctcctggcaactgtcaaatcttggccagctgtgatttattctgcattgcctgttatatct
gccatagattctcagctaaatacttcttcaatgactgatgcactcaaggaggcactagca
gagttatatgtaatcaatgggcaatatgtgaaagccttttcactttatgctgatcttatg
aagccagatatatttgatttcattgaaaaacacaacttaaatgatgccatccgcgaaaag
gttgtccaactgatgatgcttgattgcaagtgtgcggttcctctattgatccagaacaag
gacttaatttctcctcctgatgttgtctccaaactgttgaatgccagcaataagtgtgat
tcaaaatatttcttacatttatatcttcatgcattatttgaagcaaatccacatgttgga
aaggattttcatgatatgcaggtagagctttatgcagattatgatctgaaaatgctactt
ccttttctccggagcagccaacattacaccctcgagaaggcatatgacatttgtgtcaaa
agagatcttttaagagagcaagtcttcatacttggaagaatgggaaactctaaaaaggcc
ctagctgtcatcataaacaaattaggggacattgaagaggctgtagaatttgtaactatg
cagcatgatgatgatctttgggaagaattaattaggcaatgtcttcacaaacctgaaatg
gtaggggtattgttggagcacaccgttggcaatcttgatcctctatacattgtaaatatg
gtccccaatggcttggaaatacctcggcttagggatcgtcttgtcaaaattatcactgat
tacagaactgaaacgtctctgagacatgggtgcaatgatattctcaagactgattgtgta
aatctcttgatcaaatattacaaagaagcaagaagggctctttgcttaagcaatgaagaa
gaagctcgagtgaaaagggatggcagaggggattctcaagcaatttggagaacagtaggt
gcaagagccatggaggttaagtcaaaaaccaggggagacacaagatgttgcatgtgcttt
gatcccttctctatactagatgtatcggttgttgtattcttttgctgccatgcttatcac
atgtcttgtcttatggattctatgcatactgtaagtggaaaaaaagggagtggagcaact
tccaggatgtcagaatatgactatgatagcaatgatgaggatgactacgatgatgaaaac
aacaacgattctggtgtaattcggttgagatgcatcttatgtactactgctgcaggttga
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