Populus euphratica (Euphrates poplar): 105112532
Help
Entry
105112532 CDS
T05872
Name
(RefSeq) uncharacterized protein LOC105112532 isoform X1
KO
K06100
symplekin
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105112532
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
peu03021
]
105112532
03019 Messenger RNA biogenesis [BR:
peu03019
]
105112532
Transcription machinery [BR:
peu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105112532
Messenger RNA biogenesis [BR:
peu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
105112532
U7-dependent histone pre-mRNA processing factors
105112532
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_EZ
HEAT_2
DUF7237
Motif
Other DBs
NCBI-GeneID:
105112532
NCBI-ProteinID:
XP_011006559
UniProt:
A0AAJ6X5X1
LinkDB
All DBs
Position
Unknown
AA seq
1357 aa
AA seq
DB search
MVAMTKSSSRERLASLINSAKSAPDIPLKLQTLRQLNQILQQQENANSLSEFLPGIFEFQ
SDQHSPVRKFATEIIGEIGLKHLEFVPEIVPVLMLVLEDPVPAVARQAITCGISLFRATL
EKLAIQGLYASELDDLLKFSWSSMLEFKEKIYSIAFQLGSGGVRLLALKFVEEVILLYTP
DPYGTSEPPSHEGSSVEFNISWLRGGHPVLNVGDLSIEASRKLSLLLDQLRMPTVKSISN
LMIIVLVNSLAMIAKKRPPCYGRILPVLLGLDPSNSVIEGMHGYGAHHALKNAFLTCLKC
NHLGAAPWRDRLVGVLKEMKAGELAEEALQVFRSNGSVEETKEDFLVAQEEKLSIKSSDG
IPNNSARKRSGPEDSIDLADLAKDDDVSGKRVKSSPSVSEESSKELDHRTNKKDDDNGPV
QQLVAMFGALVAQGEKAVGSLEILISSISADLLAEVVMANMRYLPTGHPQVEGDDESLLN
MTIVGSDTRAKYPSSFLTNVLSLSSSFPPIAAQLNSGPSVSKDILTTEEEELQTTTDEEE
LQTTKDEEELHFAAADVPDVYAGKAHGAEDELMPAGLPASSNVDLSGMQMDGLAVSSNIH
DFENLDSEIPGLDSSARNDVFSETMGASSLVSTDIEDASQEQGTSLGTRSNQEVLPSISN
DRSEELSPKAAAMDSNSLISSTATSVRLHQPLVLPKLSAPVVNLVDEQKDQLQNLAFIRI
IEAYKQIAVAGSSQFRLSLLASLGVEFPSELDPWELLKKHILSDYVVHEGHELTLHVLYR
LFGEVEEEHDFFSSTTAASVYEMFLLTVAETLRDSFPPSDKSLSRLLGEAPYLPNSIFSL
LESLCSPGNIDKAEELQSGDRVTQGLSTVWSLILLRPPIRESCLKIALQSAVHHLEEVRM
KALRLVANKLYPLSSIAQRIEDFAKEKLLSVVNSDATESKDAEGSFSELQKDSILEKPSN
EHQSMSAINKDISSETHQSCTSESVSSLSISEAQRCLSLYFALCTKKHSLFRQIFIVYKS
ASKAVKQAVNRHIPILVRTMGSSSDLLEIISDPPIGSENLLMQVLQTLTEGAVPSPELLV
TIRKLYDSKIKDAEILIPILPFLPRDEILLIFPHLVNLPLDKFQIALARTLQGSSHSGMM
LSPAEVLIAIHGIDPDRDGIPLKKVTDACNACFEQRQIFTQQVLAKVLNQLVEQIPLPLL
FMRTVLQAIGAFPALVEFIMEILSRLVSKQIWKYPKLWVGFLKCALLTKPQSFNVLLQLP
PPQLENALNRTAALKAPLVAYASQPNIKSSLPRSVLVVLGIAPDPQTSSQAQTCLAQTGD
TNNSDKDVIVENSKTGETSNTVTEVLTEKSKESSVAS
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggtagccatgacgaaatcgagttcaagagaaagactagcgagtctcatcaactcagcc
aagtctgcccctgacatacctttaaagctccaaactttgcgtcaattaaaccaaattttg
caacaacaagaaaacgctaactcactctctgagttccttcctggaattttcgagtttcag
tctgatcaacattctcctgttcgcaaatttgccactgagataattggagagattggattg
aagcatttagaatttgtgcccgaaattgttccggttttaatgttagttttggaagatcct
gtaccggctgttgctagacaagctatcacttgcgggatcagtttgtttcgggctactctc
gaaaaacttgcaattcagggtctttatgctagcgagctggatgatttgcttaagttttcc
tggtcatcgatgttagagttcaaggaaaaaatttactccatagcttttcagctgggaagt
ggtggtgtaagattgctggcactaaagtttgttgaagaagtcattcttctttacactcct
gatccttatggcacatcagagcccccttctcatgaaggatcaagtgtggaatttaacata
tcatggctccgtgggggccaccctgtactaaatgttggagatttgtcaattgaggccagc
agaaaattgagtttattgctcgatcagcttaggatgccaacagtgaaatctatcagtaac
ttaatgatcattgtgcttgttaatagccttgccatgattgcaaagaaaaggcctccatgc
tatggacgcattctgccagttttacttggtttggatccctcaaactctgttattgaaggg
atgcatggttatggggcacatcatgctttaaaaaatgccttcctcacctgcttgaagtgc
aatcacctgggtgctgcaccgtggcgggatcgtttagttggtgttctaaaagagatgaaa
gccggagagttggcagaggaagcgctacaagttttcaggagcaatggaagtgtagaggag
acaaaggaagattttctagttgcacaggaagaaaaactctcaattaagtcatctgatggc
attccaaataattcagcaaggaaacgatctggaccagaagacagtattgatttggctgat
ttggctaaagatgatgatgtgtctggaaaacgtgtcaaatcatcccccagtgtctcggag
gaatcatctaaagagttggatcatagaactaacaaaaaagatgatgataatggacctgtg
cagcaacttgttgctatgtttggagccctggttgctcaaggtgaaaaagctgttggttct
ttggagattcttatttcaagcatctctgctgacttgttagctgaagtagtgatggctaac
atgcgctaccttcctactggtcatccccaagtggaaggagatgatgagtcactattgaac
atgactattgttggcagtgacactagagccaagtatccatcttcttttctgactaatgtt
ctttcactttctagttccttcccacctatagctgcacaactgaattctggtccttcagta
tccaaagacatactgacaacagaggaggaagaactgcagacaacaacagacgaggaagaa
ctgcagacaacaaaagacgaggaagaactccattttgcagcagctgatgtccctgatgta
tatgctggaaaagctcatggtgctgaagatgaactaatgcctgcaggtttacctgcttct
tcaaatgtcgatttatctgggatgcagatggatggtttggctgtttcatctaatatccat
gattttgagaatttagacagtgaaatacctggtctagattcttctgctcgtaatgatgta
ttttcagagaccatgggtgcttcttcactggtctctactgatattgaagatgccagccaa
gagcaaggtacaagtctgggtacaaggtcaaaccaggaagtgcttccatcaatatcaaat
gacaggtcagaggagctaagtcctaaagcagctgctatggattccaacagcctgatctcc
tcaactgcaacttctgtgcgtttacaccagcctcttgttctgcctaagctgtctgcacct
gttgtcaatcttgttgacgaacagaaggatcagctgcaaaatttggctttcatacgcatc
attgaggcatacaagcaaatagcagttgctggaagttcacaatttcgcctttccttgctt
gcttctttaggagttgagtttccttcagagttagacccatgggaactccttaaaaagcac
atattgtcagattatgtggttcatgagggacacgagttgacattgcatgtcctctacagg
ttatttggtgaggtagaagaggaacatgacttcttttcttctacaactgctgcttctgtg
tatgaaatgttccttctgactgtggctgaaacgcttagagattcttttcctccttcagac
aaatctttaagtagattgcttggtgaagctccttatcttccaaattcaattttcagtctt
ttagagtccttgtgttctcctggaaacattgataaagctgaggagttgcaaagtggagat
cgagttactcaaggtctcagcactgtatggagcctgattttgctgaggcctcctattcga
gaatcctgcttaaaaattgctctgcagagtgcagttcatcatttggaagaagtgcgtatg
aaggcacttcgtctggtggcaaataagctttatcctctctcatccatcgctcaacggata
gaagatttcgcaaaggaaaagctgctttctgtggtaaatagtgatgctacagaaagcaag
gatgctgaagggtcattctctgaattacagaaggattcgattttggaaaaaccatcaaat
gagcatcaatctatgagtgccatcaataaagatatctcctctgagactcatcagtcatgc
acatctgaaagtgtatcatcactctcaatctcagaggcccagcggtgcttgtcactgtat
tttgccctgtgcacaaagaagcactccctttttcgccaaatttttattgtttataaaagt
gcatcaaaggcagttaaacaggcagttaatcggcacattcctatactagtccgtactatg
ggttcgtcatctgatcttcttgaaataatttcagatcctcctattggaagcgagaatctt
ctgatgcaggttttacaaacactgacagaaggggcagttccctcacctgaattgttagtc
accattaggaagttgtatgattcaaaaataaaggatgcagagatcctaattccaatatta
ccattcctacccagagatgagattttgctgatctttccccatttagtgaatcttcctctg
gataagttccaaattgcacttgctcgtacactacagggatcatctcattctggtatgatg
ctctctccagctgaagtgttaattgccatccatggtattgatcctgacagggatggaatc
cccttgaagaaggttacagatgcttgcaatgcttgttttgagcaacgacaaatattcact
cagcaagttcttgcaaaggtcttaaatcagttggttgagcaaattcctcttcctttatta
ttcatgcgcacggtactacaggctataggtgcttttccagcattggtggagtttattatg
gagatcctttctcgtctcgtaagcaagcagatatggaagtacccgaagttgtgggttggc
ttcctgaagtgtgcattattgacgaagcctcagtcattcaatgtgttacttcagcttcct
ccaccacaacttgaaaatgcactgaacagaactgcagcactgaaagctcctttggttgcc
tatgctagccaaccaaacattaaatcttcacttccaaggtctgttctggtggtcctggga
atagctccagaccctcagacttcaagtcaagcacagacatgtctggcacaaactggagat
acgaacaactcagataaggatgtgattgtagagaattcaaaaactggagaaacgagcaac
acagttacggaggtgctgacagagaaatctaaagaatcttctgttgctagctga
DBGET
integrated database retrieval system
