KEGG   Populus euphratica (Euphrates poplar): 105113322
Entry
105113322         CDS       T05872                                 
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
peu  Populus euphratica (Euphrates poplar)
Pathway
peu04120  Ubiquitin mediated proteolysis
peu04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:peu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    105113322
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    105113322
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:peu04121]
    105113322
Enzymes [BR:peu01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     105113322
Ubiquitin system [BR:peu04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    105113322
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     105113322
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_TEP1_2nd WDR55 Beta-prop_RIG_2nd Beta-prop_EIPR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR19_1st zf-C3HC4_2 EIF3I Beta-prop_HPS5 Beta-prop_DCAF4 WD40_MABP1-WDR62_1st Beta-prop_WDR90_POC16_2nd zf-C3HC4 Beta-prop_TEP1_C Beta-prop_EML WD40_like Beta-prop_CAF1B_HIR1 zf-C3HC4_3 zf-RING_2 WD40_RFWD3 U-box Beta-prop_WDR35_TULP_N zf-RING_UBOX zf-C3HC4_4 Beta-prop_SCAP zf-RING_5 Beta-prop_DCAF12 Beta-prop_IFT140_1st DUF1664 Beta-prop_WDR75_1st zf-rbx1 Beta-prop_IFT122_2nd zf-RING_10 YbfN Prok-RING_4 zf-RING_6
Other DBs
NCBI-GeneID: 105113322
NCBI-ProteinID: XP_011007761
UniProt: A0AAJ6TBM9
LinkDB
Position
Unknown
AA seq 672 aa
MEEVSTGAIVPAVKPEPKPSTSTAAAVAPPEPSSAPSAEDAELEKDFLCPICMQIIKDAF
LTACGHSFCYMCITTHLRNKNDCPCCRHYLTTNQLFPNFLLQKLLKKASARQTSKNASPI
EHFRQSLQQGCEVSIKDLDALMSLLAERKRKMEQEEAERNMQVLLDFLHYLRKQKMDELN
EVRTDLRYIKEDIDAVEKHRIELYRARDRYSMKLRMLGDDLTVRKPWASTIDKNHSGVVT
SSLNARGLTTGNIPTKKMDGKAQVSSHGLQRKDTSSGSDPQYNHSGLSAVKKKRVHAQFN
DLQDCYLQKRRQLANHPHNQSERDKNVIHREGYNAGLADFQSVLSTFTQYSRLRVIAELR
HGDIFHSANIVSSIEFDRDDEFFATAGVSRRIKVFDFSSVVNEPADVHCPVVEMSTRSKL
SCLSWNKFTKNHIASSDYEGIVTVWDVTTRQSVMEYEEHEKRAWSVDFSRTEPSMLVSGS
DDCKVKVWCTKQEASVLNIDMKANICCVKYNPGSSNYIAVGSADHQIHYYDLRNVTHPLY
VFSGHRKTVSYVKFLSNSELASASTDSTLRLWDVKENLPVRTLRGHTNEKNFVGLSVSSE
YIACGSETNEVFVYHKEISKHVTRHRFGSPEMDDADEDAGSYFISAVCWKSDSPTMLSAN
SQGTIKVLVLAA
NT seq 2019 nt   +upstreamnt  +downstreamnt
atggaagaggtttcaacgggggccattgtcccagcggtaaagccagagccgaaaccctca
acatccacggctgccgcagttgcgccgcctgagccctcctccgccccgagcgcagaagat
gctgagctggagaaggatttcctctgcccgatttgcatgcagattataaaagatgccttc
ctcacagcatgtggtcacagcttttgctacatgtgcatcaccacacacctccgtaacaag
aacgattgcccttgctgtagacattacctcactaccaatcagctcttccctaatttcttg
ctccaaaagctattaaagaaggcctctgctcgtcaaacatccaagaatgcgtcgcctatt
gaacattttcgccaatccttacagcagggttgtgaagtttcaattaaggacctggacgcc
ctcatgtcacttcttgcagagaggaagagaaaaatggaacaagaagaagccgagagaaat
atgcaggtgctgctagatttcttgcactacttgcggaagcaaaagatggatgaattgaat
gaggtacgtaccgatcttcgatatattaaggaggacatagatgctgtagagaaacacaga
attgagctgtatcgtgccagggataggtactctatgaaattgcgaatgcttggagatgat
ctcactgtgcgaaaaccgtgggcgtcaacaattgacaagaaccacagtggtgttgtcacc
agttctcttaatgctagagggctgactactgggaatattccaaccaagaaaatggatgga
aaggctcaagtaagctctcatgggctccagagaaaggatacatcaagtgggtctgacccg
caatataatcactcaggtttatctgcagtgaagaaaaagcgcgtgcatgcacagttcaat
gacctgcaagattgttacttgcaaaagcgccgtcagttggcaaatcatccgcataaccag
tcagaaagggataaaaatgtcattcatagagagggctacaatgctggtcttgcagatttt
caatctgtgctgagtacatttactcagtacagtcggttaagggtcattgctgaactcagg
cacggggatatatttcactcagccaatatagtatcaagcatagaatttgaccgtgatgat
gaatttttcgctactgctggagtttcacggcgaatcaaagtctttgacttttcttctgtt
gtgaatgaacctgcagatgtgcactgccctgttgtggagatgtctacacgttctaaactt
agctgcttgagttggaacaagtttactaaaaatcatatagccagtagtgattatgaggga
atagtaactgtttgggatgtgacaaccaggcagagcgtgatggaatacgaagagcatgaa
aaacgtgcatggagtgttgatttttctcgcacagaaccttctatgcttgtatctggtagc
gatgattgtaaggtcaaagtttggtgcacaaagcaggaggctagcgttctaaacattgac
atgaaagcaaatatttgttgtgtcaagtacaatcctggatctagcaattatattgcggtt
ggttcagcagaccaccagattcactactatgatttgagaaatgtcacccatccactctat
gtgttcagcgggcaccggaaaactgtttcatatgtaaaattcttatctaacagcgagctt
gcttcagcgtcaacagacagcacattaaggttatgggatgtaaaagagaatctgcctgtt
cgtacccttagaggccacacaaacgagaaaaactttgtgggtctctcagtaagcagtgaa
tatattgcatgtgggagtgaaacaaatgaggtctttgtctaccataaggaaatctctaaa
catgtgacacggcatagatttggttcccctgagatggatgatgctgatgaggatgcagga
tcttacttcatcagtgctgtttgctggaagagtgatagtcctacaatgctatctgcaaat
agtcagggtacaataaaagtattggttcttgcagcttga

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